Curated BLAST for Genomes

 

Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 43 curated entries in PaperBLAST's database that match '5.3.1.4' as complete word(s).

These curated entries have 37 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_1879: L-arabinose isomerase
is similar to:		 PaperBLAST

Echvi_1879: L-arabinose isomerase (EC 5.3.1.4) from Echinicola vietnamensis

 100% id,
100% cov

CA265_RS08615: L-arabinose isomerase (EC 5.3.1.4) from Pedobacter sp.

 72% id,
100% cov

Q2VMT2: L-arabinose isomerase (EC 5.3.1.4) from Alicyclobacillus acidocaldarius

 60% id,
99% cov

More...

Echvi_0165: KpsF/GutQ family protein
is similar to:		 PaperBLAST

Q3IG38: L-arabinose isomerase (EC 5.3.1.4) from Pseudoalteromonas haloplanktis

 42% id,
98% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

168383-169366 (frame -2) on Echvi_Contig97.1
is similar to:		 PaperBLAST

Q3IG38: L-arabinose isomerase (EC 5.3.1.4) from Pseudoalteromonas haloplanktis
Also see hits to annotated proteins above

 42% id,
100% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory