Curated BLAST for Genomes

 

Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 63 curated entries in PaperBLAST's database that match '5.4.99.5' as complete word(s).

These curated entries have 44 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_0120: 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase
is similar to:
PaperBLAST

Echvi_0120: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase / chorismate mutase (EC 2.5.1.54; EC 5.4.99.5) from Echinicola vietnamensis

100% id,
100% cov

CA265_RS11635: chorismate mutase (EC 5.4.99.5) from Pedobacter sp.

48% id,
91% cov

P39912: chorismate mutase (EC 5.4.99.5) from Bacillus subtilis

34% id,
64% cov

Echvi_2512: phospho-2-dehydro-3-deoxyheptonate aldolase
is similar to:
PaperBLAST

P39912: chorismate mutase (EC 5.4.99.5) from Bacillus subtilis

39% id,
98% cov

Echvi_0120: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase / chorismate mutase (EC 2.5.1.54; EC 5.4.99.5) from Echinicola vietnamensis

33% id,
65% cov

CA265_RS11635: chorismate mutase (EC 5.4.99.5) from Pedobacter sp.

28% id,
66% cov

Echvi_0123: Prephenate dehydratase
is similar to:
PaperBLAST

CMPDT_BUCAI / P57472: Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 from Buchnera aphidicola

32% id,
70% cov

CMPDT_PSEST / P27603: Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 from Pseudomonas stutzeri

30% id,
73% cov

CMPDT_ECOLI / P0A9J8: Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 from Escherichia coli
PheA / b2599: fused chorismate mutase/prephenate dehydratase (EC 5.4.99.5; EC 4.2.1.51) from Escherichia coli
CH_024084: P-protein; EC 4.2.1.51; EC 5.4.99.5 from Escherichia coli
pheA / P0A9J8: fused chorismate mutase/prephenate dehydratase (EC 5.4.99.5; EC 4.2.1.51) from Escherichia coli

30% id,
72% cov

More...

Echvi_2131: 3-deoxy-8-phosphooctulonate synthase
is similar to:
PaperBLAST

P39912: chorismate mutase (EC 5.4.99.5) from Bacillus subtilis

31% id,
66% cov

Echvi_2345: isochorismate synthases
is similar to:
PaperBLAST

MBTI_MYCTU / P9WFX1: Salicylate synthase; Chorismate mutase; CM; Isochorismate synthase/isochorismate lyase; Mycobactin synthase protein; EC 5.4.99.5; EC 4.2.99.21; EC 5.4.4.2 from Mycobacterium tuberculosis

24% id,
64% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory