Curated BLAST for Genomes

 

Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 8 curated entries in PaperBLAST's database that match '5.5.1.1' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_0872: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
is similar to:
PaperBLAST

Q4K9X1: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas fluorescens

27% id,
93% cov

catB / A0F0B3: muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas reinekei

26% id,
93% cov

PS417_23670: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas simiae

26% id,
88% cov

Echvi_3769: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
is similar to:
PaperBLAST

Q4K9X1: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas fluorescens

26% id,
87% cov

PS417_23670: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas simiae

25% id,
89% cov

catB / A0F0B3: muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas reinekei

24% id,
87% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory