Curated BLAST for Genomes

 

Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 181 curated entries in PaperBLAST's database that match '6.2.1.1'.

These curated entries have 139 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_1268: acetate--CoA ligase
is similar to:
PaperBLAST

AO356_18695: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

57% id,
95% cov

AO353_03060: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

56% id,
95% cov

ACSA_ECOLI / P27550: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Escherichia coli
AcsA / b4069: acetyl-CoA synthetase (AMP-forming) (EC 6.2.1.1; EC 6.2.1.17) from Escherichia coli
acs / P27550: acetyl-CoA synthetase (AMP-forming) (EC 6.2.1.1; EC 6.2.1.17) from Escherichia coli

55% id,
95% cov

More...

Echvi_0015: succinyl-CoA synthetase, alpha subunit
is similar to:
PaperBLAST

ccsB / Q75VW6: citryl-CoA synthetase small subunit (EC 6.2.1.18) from Hydrogenobacter thermophilus
Q75VW6: citrate-CoA ligase (EC 6.2.1.18) from Hydrogenobacter thermophilus

40% id,
84% cov

Q9NAT4: acetate-CoA ligase (ADP-forming) (EC 6.2.1.13) from Entamoeba histolytica

26% id,
36% cov

C4LUV9: acetate-CoA ligase (ADP-forming) (EC 6.2.1.13) from Entamoeba histolytica

26% id,
36% cov

More...

Echvi_2567: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
is similar to:
PaperBLAST

A0A0D4C3L0: 4-coumarate-CoA ligase (EC 6.2.1.12) from Plagiochasma appendiculatum

29% id,
95% cov

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

30% id,
94% cov

4CL2_ORYSJ / Q42982: 4-coumarate--CoA ligase 2; 4CL 2; Os4CL2; 4-coumaroyl-CoA synthase 2; EC 6.2.1.12 from Oryza sativa
Q42982: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa

29% id,
94% cov

More...

Echvi_2300: amino acid adenylation domain
is similar to:
PaperBLAST

4CL1_NARPS / A0A2H5AIX5: 4-coumarate-CoA ligase 1; EC 6.2.1.12 from Narcissus pseudonarcissus

26% id,
94% cov

D5LNB5: 4-coumarate-CoA ligase (EC 6.2.1.12) from Sorbus aucuparia

24% id,
97% cov

CCL1_HUMLU / M4ISH0: 4-coumarate--CoA ligase CCL1; HlCCL1; EC 6.2.1.12 from Humulus lupulus

24% id,
98% cov

More...

Echvi_2301: amino acid adenylation domain
is similar to:
PaperBLAST

4CL5_ORYSJ / Q6ZAC1: 4-coumarate--CoA ligase 5; 4CL 5; Os4CL5; 4-coumaroyl-CoA synthase 5; EC 6.2.1.12 from Oryza sativa
Q6ZAC1: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa

26% id,
91% cov

O24146: 4-coumarate-CoA ligase (EC 6.2.1.12) from Nicotiana tabacum

25% id,
91% cov

D5LNB5: 4-coumarate-CoA ligase (EC 6.2.1.12) from Sorbus aucuparia

24% id,
93% cov

More...

Echvi_1291: amino acid adenylation domain
is similar to:
PaperBLAST

4CL2 / P14913: 4-coumarate--CoA ligase 1 (EC 6.2.1.12) from Petroselinum crispum

25% id,
94% cov

A0A1L7H9K1: 4-coumarate-CoA ligase (EC 6.2.1.12) from Peucedanum praeruptorum

24% id,
94% cov

B7SB99: 4-coumarate-CoA ligase (EC 6.2.1.12) from Physcomitrella patens

24% id,
92% cov

More...

Echvi_2908: succinyl-CoA synthetase, beta subunit
is similar to:
PaperBLAST

ACDB2_PYRFU / Q8TZY8: Acetate--CoA ligase [ADP-forming] II subunit beta; ADP-forming acetyl coenzyme A synthetase II subunit beta; ACS II subunit beta; EC 6.2.1.13 from Pyrococcus furiosus

25% id,
90% cov

Echvi_0198: Coenzyme F390 synthetase
is similar to:
PaperBLAST

luxE / A8R7D1: long-chain-fatty-acid--protein ligase (EC 6.2.1.19) from Photobacterium phosphoreum

23% id,
88% cov

Echvi_2340: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
is similar to:
PaperBLAST

4CL1_NARPS / A0A2H5AIX5: 4-coumarate-CoA ligase 1; EC 6.2.1.12 from Narcissus pseudonarcissus

24% id,
63% cov

D5LLN7: 4-coumarate-CoA ligase (EC 6.2.1.12) from Sorbus aucuparia

23% id,
63% cov

B8QN50: 4-coumarate-CoA ligase (EC 6.2.1.12) from Pinus radiata

26% id,
52% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. Except for 3 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1454082-1455980 (frame +3) on Echvi_Contig97.1
is similar to:
PaperBLAST

AO356_18695: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens
Also see hits to annotated proteins above

57% id,
96% cov

AO353_03060: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens
Also see hits to annotated proteins above

56% id,
96% cov

Q2XNL6: acetate-CoA ligase (EC 6.2.1.1) from Methanothermobacter thermautotrophicus
Also see hits to annotated proteins above

48% id,
97% cov

More...

14478-15428 (frame +3) on Echvi_Contig97.1
is similar to:
PaperBLAST

ccsB / Q75VW6: citryl-CoA synthetase small subunit (EC 6.2.1.18) from Hydrogenobacter thermophilus
Q75VW6: citrate-CoA ligase (EC 6.2.1.18) from Hydrogenobacter thermophilus
Also see hits to annotated proteins above

39% id,
86% cov

3483639-3484877 (frame -1) on Echvi_Contig97.1
is similar to:
PaperBLAST

ACDB2_PYRFU / Q8TZY8: Acetate--CoA ligase [ADP-forming] II subunit beta; ADP-forming acetyl coenzyme A synthetase II subunit beta; ACS II subunit beta; EC 6.2.1.13 from Pyrococcus furiosus
Also see hits to annotated proteins above

25% id,
93% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory