Curated BLAST for Genomes

 

Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 117 curated entries in PaperBLAST's database that match '6.3.1.2' as complete word(s).

These curated entries have 85 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_2357: Uncharacterized protein related to glutamine synthetase
is similar to:
PaperBLAST

Q5LGP1: glutamine synthetase (EC 6.3.1.2) from Bacteroides fragilis

55% id,
98% cov

GLNA3_BACFR / P15623: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase III; GSIII; EC 6.3.1.2 from Bacteroides fragilis

55% id,
98% cov

gluN / Q4ZH57: glutamine synthetase subunit (EC 6.3.1.2) from Ruminococcus albus

48% id,
99% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2795593-2797755 (frame +1) on Echvi_Contig97.1
is similar to:
PaperBLAST

Q5LGP1: glutamine synthetase (EC 6.3.1.2) from Bacteroides fragilis
Also see hits to annotated proteins above

54% id,
100% cov

GLNA3_BACFR / P15623: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase III; GSIII; EC 6.3.1.2 from Bacteroides fragilis
Also see hits to annotated proteins above

54% id,
100% cov

glnN / Q31RW8: glutamine synthetase type III subunit (EC 6.3.1.2) from Synechococcus elongatus
Also see hits to annotated proteins above

46% id,
99% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory