Curated BLAST for Genomes

 

Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 7 curated entries in PaperBLAST's database that match '3-isopropylmalate dehydratase large subunit' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_2059: 3-isopropylmalate dehydratase, large subunit
is similar to:
PaperBLAST

LEUC1_SALTY / P15717: 3-isopropylmalate dehydratase large subunit 1; Alpha-IPM isomerase 1; IPMI 1; Isopropylmalate isomerase 1; EC 4.2.1.33 from Salmonella typhimurium

54% id,
99% cov

leuC / ECOCYC|LEUC-MONOMER: 3-isopropylmalate dehydratase large subunit; EC 4.2.1.33 from Escherichia coli

54% id,
99% cov

LEUC_MYCBO / Q7TXH6: 3-isopropylmalate dehydratase large subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 from Mycobacterium bovis

55% id,
99% cov

More...

Echvi_2531: aconitate hydratase, mitochondrial
is similar to:
PaperBLAST

LEUC_MYCBO / Q7TXH6: 3-isopropylmalate dehydratase large subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 from Mycobacterium bovis

26% id,
98% cov

LEUC_ARATH / Q94AR8: 3-isopropylmalate dehydratase large subunit, chloroplastic; 2-(omega-methylthio)alkylmalate dehydratase large subunit; AtLEUC; Isopropylmalate isomerase large subunit 1; AtIIL1; IPMI LSU1; Methylthioalkylmalate isomerase large subunit; MAM-IL; EC 4.2.1.33; EC 4.2.1.170 from Arabidopsis thaliana

29% id,
63% cov

GLOJ_GLAL2 / S3E7P8: 3-isopropylmalate dehydratase large subunit gloJ; L-homotyrosine biosynthesis sub-cluster protein gloJ; Pneumocandin biosynthesis cluster protein J; EC 4.2.1.33 from Glarea lozoyensis

26% id,
47% cov

Echvi_4039: aconitate hydratase 1
is similar to:
PaperBLAST

LEUC_ARATH / Q94AR8: 3-isopropylmalate dehydratase large subunit, chloroplastic; 2-(omega-methylthio)alkylmalate dehydratase large subunit; AtLEUC; Isopropylmalate isomerase large subunit 1; AtIIL1; IPMI LSU1; Methylthioalkylmalate isomerase large subunit; MAM-IL; EC 4.2.1.33; EC 4.2.1.170 from Arabidopsis thaliana

28% id,
58% cov

GLOJ_GLAL2 / S3E7P8: 3-isopropylmalate dehydratase large subunit gloJ; L-homotyrosine biosynthesis sub-cluster protein gloJ; Pneumocandin biosynthesis cluster protein J; EC 4.2.1.33 from Glarea lozoyensis

30% id,
15% cov

Echvi_2060: 3-isopropylmalate dehydratase, small subunit
is similar to:
PaperBLAST

GLOJ_GLAL2 / S3E7P8: 3-isopropylmalate dehydratase large subunit gloJ; L-homotyrosine biosynthesis sub-cluster protein gloJ; Pneumocandin biosynthesis cluster protein J; EC 4.2.1.33 from Glarea lozoyensis

29% id,
15% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory