Curated BLAST for Genomes

 

Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 2 curated entries in PaperBLAST's database that match 'O-succinylhomoserine sulfhydrylase' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_2283: Cystathionine beta-lyases/cystathionine gamma-synthases
is similar to:
PaperBLAST

METZ_PSEAE / P55218: O-succinylhomoserine sulfhydrylase; OSH sulfhydrylase; OSHS sulfhydrylase; EC 2.5.1.- from Pseudomonas aeruginosa

48% id,
95% cov

METZ_MYCTU / P9WGB5: O-succinylhomoserine sulfhydrylase; OSH sulfhydrylase; OSHS sulfhydrylase; EC 2.5.1.- from Mycobacterium tuberculosis

44% id,
95% cov

Echvi_4510: Cystathionine beta-lyases/cystathionine gamma-synthases
is similar to:
PaperBLAST

METZ_PSEAE / P55218: O-succinylhomoserine sulfhydrylase; OSH sulfhydrylase; OSHS sulfhydrylase; EC 2.5.1.- from Pseudomonas aeruginosa

38% id,
96% cov

METZ_MYCTU / P9WGB5: O-succinylhomoserine sulfhydrylase; OSH sulfhydrylase; OSHS sulfhydrylase; EC 2.5.1.- from Mycobacterium tuberculosis

38% id,
85% cov

Echvi_2080: Cystathionine beta-lyases/cystathionine gamma-synthases
is similar to:
PaperBLAST

METZ_PSEAE / P55218: O-succinylhomoserine sulfhydrylase; OSH sulfhydrylase; OSHS sulfhydrylase; EC 2.5.1.- from Pseudomonas aeruginosa

35% id,
96% cov

METZ_MYCTU / P9WGB5: O-succinylhomoserine sulfhydrylase; OSH sulfhydrylase; OSHS sulfhydrylase; EC 2.5.1.- from Mycobacterium tuberculosis

30% id,
89% cov

Echvi_1734: Cystathionine beta-lyases/cystathionine gamma-synthases
is similar to:
PaperBLAST

METZ_PSEAE / P55218: O-succinylhomoserine sulfhydrylase; OSH sulfhydrylase; OSHS sulfhydrylase; EC 2.5.1.- from Pseudomonas aeruginosa

34% id,
96% cov

METZ_MYCTU / P9WGB5: O-succinylhomoserine sulfhydrylase; OSH sulfhydrylase; OSHS sulfhydrylase; EC 2.5.1.- from Mycobacterium tuberculosis

32% id,
87% cov

Echvi_3411: OAH/OAS sulfhydrylase
is similar to:
PaperBLAST

METZ_PSEAE / P55218: O-succinylhomoserine sulfhydrylase; OSH sulfhydrylase; OSHS sulfhydrylase; EC 2.5.1.- from Pseudomonas aeruginosa

34% id,
54% cov

METZ_PSEAE / P55218: O-succinylhomoserine sulfhydrylase; OSH sulfhydrylase; OSHS sulfhydrylase; EC 2.5.1.- from Pseudomonas aeruginosa

38% id,
45% cov

METZ_MYCTU / P9WGB5: O-succinylhomoserine sulfhydrylase; OSH sulfhydrylase; OSHS sulfhydrylase; EC 2.5.1.- from Mycobacterium tuberculosis

36% id,
47% cov

More...

Echvi_4167: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes
is similar to:
PaperBLAST

METZ_PSEAE / P55218: O-succinylhomoserine sulfhydrylase; OSH sulfhydrylase; OSHS sulfhydrylase; EC 2.5.1.- from Pseudomonas aeruginosa

29% id,
37% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

5385761-5386981 (frame +2) on Echvi_Contig97.1
is similar to:
PaperBLAST

METZ_PSEAE / P55218: O-succinylhomoserine sulfhydrylase; OSH sulfhydrylase; OSHS sulfhydrylase; EC 2.5.1.- from Pseudomonas aeruginosa
Also see hits to annotated proteins above

38% id,
98% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory