Curated BLAST for Genomes

 

Curated BLAST

Searching in Echinicola vietnamensis KMM 6221, DSM 17526 (Cola)

Found 3 curated entries in PaperBLAST's database that match 'homoaconitase large subunit' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Echinicola vietnamensis KMM 6221, DSM 17526, or try another query

Echvi_2531: aconitate hydratase, mitochondrial
is similar to:
PaperBLAST

HACA_METJA / Q58409: Methanogen homoaconitase large subunit; HACN; Homoaconitate hydratase; EC 4.2.1.114 from Methanocaldococcus jannaschii

31% id,
98% cov

HACA_THET2 / Q9ZNE0: Homoaconitase large subunit; HACN; Homoaconitate hydratase; EC 4.2.1.36 from Thermus thermophilus
lysT / Q9ZNE0: homoaconitase large subunit (EC 4.2.1.36) from Thermus thermophilus

28% id,
96% cov

Echvi_2059: 3-isopropylmalate dehydratase, large subunit
is similar to:
PaperBLAST

HACA_METJA / Q58409: Methanogen homoaconitase large subunit; HACN; Homoaconitate hydratase; EC 4.2.1.114 from Methanocaldococcus jannaschii

33% id,
70% cov

HACA_THET2 / Q9ZNE0: Homoaconitase large subunit; HACN; Homoaconitate hydratase; EC 4.2.1.36 from Thermus thermophilus
lysT / Q9ZNE0: homoaconitase large subunit (EC 4.2.1.36) from Thermus thermophilus

28% id,
61% cov

HACA_THET2 / Q9ZNE0: Homoaconitase large subunit; HACN; Homoaconitate hydratase; EC 4.2.1.36 from Thermus thermophilus
lysT / Q9ZNE0: homoaconitase large subunit (EC 4.2.1.36) from Thermus thermophilus

45% id,
32% cov

More...

Echvi_4039: aconitate hydratase 1
is similar to:
PaperBLAST

HACA_THET2 / Q9ZNE0: Homoaconitase large subunit; HACN; Homoaconitate hydratase; EC 4.2.1.36 from Thermus thermophilus
lysT / Q9ZNE0: homoaconitase large subunit (EC 4.2.1.36) from Thermus thermophilus

25% id,
52% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory