Curated BLAST for Genomes

 

Curated BLAST

Searching in Cupriavidus basilensis FW507-4G11 (Cup4G11)

Found 31 curated entries in PaperBLAST's database that match '1.1.1.41' as complete word(s).

These curated entries have 23 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Cupriavidus basilensis FW507-4G11, or try another query

RR42_RS17135: isocitrate dehydrogenase
is similar to:
PaperBLAST

Q8GAX0: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Acidithiobacillus thiooxidans

60% id,
99% cov

Q8U488: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Pyrococcus furiosus

49% id,
99% cov

IDH1_SCHPO / O13696: Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial; Isocitric dehydrogenase; NAD(+)-specific ICDH; EC 1.1.1.41 from Schizosaccharomyces pombe
idh1 / RF|NP_594397.1: isocitrate dehydrogenase (NAD+) subunit 1 Idh1; EC 1.1.1.41 from Schizosaccharomyces pombe

30% id,
93% cov

More...

RR42_RS28800: isocitrate dehydrogenase
is similar to:
PaperBLAST

A0A0M4S9Q1: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Campylobacter curvus

48% id,
100% cov

J4X756: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Campylobacter sp.

47% id,
100% cov

RR42_RS29535: isocitrate dehydrogenase
is similar to:
PaperBLAST

IDH5_ARATH / Q945K7: Isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial; IDH-V; Isocitric dehydrogenase 5; NAD(+)-specific ICDH 5; EC 1.1.1.41 from Arabidopsis thaliana
Q945K7: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Arabidopsis thaliana

43% id,
90% cov

IDH3A_HUMAN / P50213: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Homo sapiens
P50213: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Homo sapiens

42% id,
90% cov

IDH6_ARATH / Q8LG77: Isocitrate dehydrogenase [NAD] catalytic subunit 6, mitochondrial; IDH-VI; Isocitric dehydrogenase 6; NAD(+)-specific ICDH 6; EC 1.1.1.41 from Arabidopsis thaliana
Q8LG77: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Arabidopsis thaliana

42% id,
90% cov

More...

RR42_RS22955: isocitrate dehydrogenase
is similar to:
PaperBLAST

IDH5_ARATH / Q945K7: Isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial; IDH-V; Isocitric dehydrogenase 5; NAD(+)-specific ICDH 5; EC 1.1.1.41 from Arabidopsis thaliana
Q945K7: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Arabidopsis thaliana

43% id,
89% cov

IDH2_YEAST / P28241: Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial; Isocitric dehydrogenase; NAD(+)-specific ICDH; EC 1.1.1.41 from Saccharomyces cerevisiae
P28241: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Saccharomyces cerevisiae

41% id,
92% cov

IDH3A_HUMAN / P50213: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Homo sapiens
P50213: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Homo sapiens

42% id,
90% cov

More...

RR42_RS33755: tartrate dehydrogenase
is similar to:
PaperBLAST

IDH2_YEAST / P28241: Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial; Isocitric dehydrogenase; NAD(+)-specific ICDH; EC 1.1.1.41 from Saccharomyces cerevisiae
P28241: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Saccharomyces cerevisiae

36% id,
91% cov

IDH3A_HUMAN / P50213: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Homo sapiens
P50213: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Homo sapiens

35% id,
90% cov

G1APK3: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Rhodotorula toruloides

35% id,
89% cov

More...

RR42_RS14385: 3-isopropylmalate dehydrogenase
is similar to:
PaperBLAST

Q8U488: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Pyrococcus furiosus

33% id,
93% cov

P93032: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Arabidopsis thaliana

32% id,
89% cov

Q8LFC0: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Arabidopsis thaliana

31% id,
89% cov

More...

RR42_RS02600: tartrate dehydrogenase
is similar to:
PaperBLAST

IDH3A_MOUSE / Q9D6R2: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Mus musculus
Q9D6R2: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Mus musculus

32% id,
90% cov

IDH3A_HUMAN / P50213: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Homo sapiens
P50213: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Homo sapiens

32% id,
90% cov

IDH6_ARATH / Q8LG77: Isocitrate dehydrogenase [NAD] catalytic subunit 6, mitochondrial; IDH-VI; Isocitric dehydrogenase 6; NAD(+)-specific ICDH 6; EC 1.1.1.41 from Arabidopsis thaliana
Q8LG77: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Arabidopsis thaliana

32% id,
88% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory