Curated BLAST for Genomes

 

Curated BLAST

Searching in Cupriavidus basilensis FW507-4G11 (Cup4G11)

Found 26 curated entries in PaperBLAST's database that match '1.13.11.27' as complete word(s).

These curated entries have 21 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Cupriavidus basilensis FW507-4G11, or try another query

RR42_RS33500: 4-hydroxyphenylpyruvate dioxygenase
is similar to:
PaperBLAST

PfGW456L13_2935: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Pseudomonas fluorescens

80% id,
100% cov

AO353_26925: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Pseudomonas fluorescens

80% id,
100% cov

Pf6N2E2_456: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Pseudomonas fluorescens

80% id,
99% cov

More...

RR42_RS32440: 4-hydroxyphenylpyruvate dioxygenase
is similar to:
PaperBLAST

Pf6N2E2_456: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Pseudomonas fluorescens

43% id,
92% cov

AO356_22845: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Pseudomonas fluorescens

43% id,
92% cov

P80064: 4-hydroxyphenylpyruvate dioxygenase subunit (EC 1.13.11.27) from Pseudomonas sp.
P80064: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Pseudomonas fluorescens

42% id,
92% cov

More...

RR42_RS32485: 3-keto-5-aminohexanoate cleavage protein
is similar to:
PaperBLAST

Ac3H11_1849: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Acidovorax sp.

34% id,
87% cov

LLY_LEGPC / P69053: 4-hydroxyphenylpyruvate dioxygenase; 4HPPD; HPD; HPPDase; Legiolysin; EC 1.13.11.27 from Legionella pneumophila

32% id,
92% cov

HPPD_STRAW / Q53586: 4-hydroxyphenylpyruvate dioxygenase; 4HPPD; HPD; HPPDase; EC 1.13.11.27 from Streptomyces avermitilis

27% id,
91% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory