Curated BLAST for Genomes

 

Curated BLAST

Searching in Cupriavidus basilensis FW507-4G11 (Cup4G11)

Found 13 curated entries in PaperBLAST's database that match '1.3.1.12' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 14 relevant proteins in Cupriavidus basilensis FW507-4G11, or try another query

RR42_RS07370: dihydrolipoamide acetyltransferase
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

54% id,
84% cov

RR42_RS26120: dihydrolipoamide acetyltransferase
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

52% id,
83% cov

RR42_RS04470: prephenate dehydrogenase
is similar to:
PaperBLAST

O67636: prephenate dehydrogenase (EC 1.3.1.12) from Aquifex aeolicus

37% id,
90% cov

TYRC_ZYMMO / Q04983: Cyclohexadienyl dehydrogenase; Arogenate dehydrogenase; ADH; Prephenate dehydrogenase; PDH; EC 1.3.1.43; EC 1.3.1.12 from Zymomonas mobilis

35% id,
95% cov

Q81P63: prephenate dehydrogenase (EC 1.3.1.12) from Bacillus anthracis

37% id,
77% cov

More...

RR42_RS12935: dihydrolipoamide succinyltransferase
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

33% id,
68% cov

RR42_RS04460: chorismate mutase
is similar to:
PaperBLAST

TyrA / b2600: fused chorismate mutase/prephenate dehydrogenase (EC 5.4.99.5; EC 1.3.1.12) from Escherichia coli
tyrA / P07023: fused chorismate mutase/prephenate dehydrogenase (EC 5.4.99.5; EC 1.3.1.12) from Escherichia coli

27% id,
80% cov

P43902: prephenate dehydrogenase (EC 1.3.1.12) from Haemophilus influenzae

25% id,
77% cov

O30012: prephenate dehydrogenase (EC 1.3.1.12); prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Archaeoglobus fulgidus

32% id,
57% cov

RR42_RS21775: branched-chain alpha-keto acid dehydrogenase subunit E2
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

31% id,
66% cov

RR42_RS10665: branched-chain alpha-keto acid dehydrogenase subunit E2
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

29% id,
67% cov

RR42_RS14375: pilus assembly protein FimV
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

26% id,
50% cov

RR42_RS07380: dihydrolipoamide dehydrogenase
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

51% id,
18% cov

RR42_RS32735: 3-methylcrotonyl-CoA carboxylase
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

22% id,
41% cov

RR42_RS33055: branched-chain alpha-keto acid dehydrogenase subunit E2
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

34% id,
25% cov

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

29% id,
26% cov

RR42_RS26115: dihydrolipoamide dehydrogenase
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

47% id,
18% cov

RR42_RS27005: hypothetical protein
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

34% id,
20% cov

RR42_RS20020: cytochrome C
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

36% id,
18% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 11 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory