Curated BLAST for Genomes

 

Curated BLAST

Searching in Cupriavidus basilensis FW507-4G11 (Cup4G11)

Found 30 curated entries in PaperBLAST's database that match '2.3.3.13'.

These curated entries have 26 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Cupriavidus basilensis FW507-4G11, or try another query

RR42_RS05465: 2-isopropylmalate synthase
is similar to:
PaperBLAST

Q9JZG1: 2-isopropylmalate synthase (EC 2.3.3.13) from Neisseria meningitidis

63% id,
98% cov

LEU11_LEPIN / Q8F445: 2-isopropylmalate synthase 1; Alpha-IPM synthase 1; Alpha-isopropylmalate synthase 1; EC 2.3.3.13 from Leptospira interrogans

51% id,
100% cov

LeuA / b0074: 2-isopropylmalate synthase (EC 2.3.3.13) from Escherichia coli
leuA / P09151: 2-isopropylmalate synthase (EC 2.3.3.13) from Escherichia coli

50% id,
97% cov

More...

RR42_RS21205: 2-isopropylmalate synthase
is similar to:
PaperBLAST

P9WQB3: 2-isopropylmalate synthase (EC 2.3.3.13) from Mycobacterium tuberculosis

54% id,
89% cov

LEU9_YEAST / Q12166: 2-isopropylmalate synthase 2, mitochondrial; Alpha-IPM synthase 2; Alpha-isopropylmalate synthase 2; Alpha-isopropylmalate synthase II; EC 2.3.3.13 from Saccharomyces cerevisiae

47% id,
93% cov

LEU1_YEAST / P06208: 2-isopropylmalate synthase; Alpha-IPM synthase; Alpha-isopropylmalate synthase; EC 2.3.3.13 from Saccharomyces cerevisiae

48% id,
91% cov

More...

RR42_RS12425: 3-hydroxy-3-methylglutaryl-CoA lyase
is similar to:
PaperBLAST

LEU1_SULAC / Q4JA78: 2-isopropylmalate synthase; IPMS; Alpha-isopropylmalate synthase; Alpha-IPM synthase; EC 2.3.3.13 from Sulfolobus acidocaldarius

25% id,
73% cov

RR42_RS05095: 4-hyroxy-2-oxovalerate aldolase
is similar to:
PaperBLAST

B0SN40: 2-isopropylmalate synthase (EC 2.3.3.13) from Leptospira biflexa

36% id,
11% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory