Curated BLAST for Genomes

 

Curated BLAST

Searching in Cupriavidus basilensis FW507-4G11 (Cup4G11)

Found 108 curated entries in PaperBLAST's database that match '2.4.2.2'.

These curated entries have 73 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Cupriavidus basilensis FW507-4G11, or try another query

RR42_RS17400: queuine tRNA-ribosyltransferase
is similar to:
PaperBLAST

TGT_ECOLI / P0A847: Queuine tRNA-ribosyltransferase; Guanine insertion enzyme; tRNA-guanine transglycosylase; EC 2.4.2.29 from Escherichia coli
Tgt: tRNA-guanine transglycosylase (EC 2.4.2.29) from Escherichia coli
tgt / P0A847: tRNA-guanine transglycosylase (EC 2.4.2.29) from Escherichia coli
P0A847: tRNA-guanosine34 transglycosylase (EC 2.4.2.29) from Escherichia coli

66% id,
99% cov

Q54177: tRNA-guanosine34 transglycosylase (EC 2.4.2.29) from Shigella flexneri

66% id,
99% cov

tgt / Q183P1: preQ1 tRNA-ribosyltransferase (EC 2.4.2.29) from Clostridioides difficile

56% id,
98% cov

More...

RR42_RS07595: hypothetical protein
is similar to:
PaperBLAST

PURNU_ECOLI / P33644: Purine nucleoside phosphorylase YfiH; Adenosine deaminase YfiH; Polyphenol oxidase YfiH; S-methyl-5'-thioadenosine phosphorylase YfiH; EC 2.4.2.1; EC 3.5.4.4; EC 1.10.3.-; EC 2.4.2.28 from Escherichia coli

53% id,
98% cov

PURNU_GEOS3 / P84138: Purine nucleoside phosphorylase YlmD; Adenosine deaminase YlmD; S-methyl-5'-thioadenosine phosphorylase YlmD; EC 2.4.2.1; EC 3.5.4.4; EC 2.4.2.28 from Geobacillus stearothermophilus

34% id,
93% cov

PURNU_UNKP / Q1EIR0: Adenosine deaminase RL5; Laccase RL5; Multicopper oxidase RL5; Polyphenol oxidase; Purine nucleoside phosphorylase RL5; S-methyl-5'-thioadenosine phosphorylase RL5; EC 3.5.4.4; EC 1.10.3.-; EC 2.4.2.1; EC 2.4.2.28 from Unknown prokaryotic

34% id,
91% cov

More...

RR42_RS16120: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
is similar to:
PaperBLAST

cobT / A0A0K1TPX5: nicotinate-nucleotide--5-methoxybenzimidazole phosphoribosyltransferase (EC 2.4.2.21) from Moorella thermoacetica

41% id,
96% cov

cobT / A0A1D9FP51: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) from Clostridium formicaceticum

41% id,
97% cov

cobU / P29935: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase subunit (EC 2.4.2.21) from Sinorhizobium sp.
P29935: nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) from Pseudomonas denitrificans

42% id,
90% cov

More...

RR42_RS21235: thymidine phosphorylase
is similar to:
PaperBLAST

Q5SHF9: pyrimidine-nucleoside phosphorylase (EC 2.4.2.2) from Thermus thermophilus

31% id,
99% cov

TYMP / P19971: thymidine phosphorylase monomer (EC 2.4.2.3; EC 2.4.2.2) from Homo sapiens

31% id,
86% cov

PDP_BACSU / P39142: Pyrimidine-nucleoside phosphorylase; PYNP; Py-NPase; EC 2.4.2.2 from Bacillus subtilis
pdp / GB|CAB15976.2: pyrimidine-nucleoside phosphorylase; EC 2.4.2.2 from Bacillus subtilis

27% id,
96% cov

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RR42_RS11670: thymidine phosphorylase
is similar to:
PaperBLAST

Q5SHF9: pyrimidine-nucleoside phosphorylase (EC 2.4.2.2) from Thermus thermophilus

30% id,
92% cov

Ttg / b4382: thymidine phosphorylase (EC 2.4.2.2; EC 2.4.2.4; EC 2.4.2.3) from Escherichia coli
deoA / P07650: thymidine phosphorylase (EC 2.4.2.2; EC 2.4.2.3) from Escherichia coli

29% id,
90% cov

TYMP / P19971: thymidine phosphorylase monomer (EC 2.4.2.3; EC 2.4.2.2) from Homo sapiens

31% id,
83% cov

More...

RR42_RS17895: hypoxanthine phosphoribosyltransferase
is similar to:
PaperBLAST

HGXR_PLAFG / P20035: Hypoxanthine-guanine-xanthine phosphoribosyltransferase; HGPRT; HGXPRT; HGXPRTase; EC 2.4.2.22; EC 2.4.2.8 from Plasmodium falciparum

22% id,
74% cov

RR42_RS30625: cob(II)yrinic acid a,c-diamide reductase
is similar to:
PaperBLAST

D7GJ95: 5,6-dimethylbenzimidazole synthase (EC 1.13.11.79); nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) from Propionibacterium freudenreichii

41% id,
34% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2192467-2193090 (frame -1) on NZ_CP010537
is similar to:
PaperBLAST

XYLT1_HUMAN / Q86Y38: Xylosyltransferase 1; Peptide O-xylosyltransferase 1; Xylosyltransferase I; XT-I; XylT-I; EC 2.4.2.26 from Homo sapiens
CAD62248.1: peptide O-β-xylosyltransferase I (XT-I;XylT1;XYLT1) (EC 2.4.2.26) from
XYLT1 / Q86Y38: xylosyltransferase 1 (EC 2.4.2.26) from Homo sapiens
Q86Y38: protein xylosyltransferase (EC 2.4.2.26) from Homo sapiens

50% id,
5% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory