Curated BLAST for Genomes


Curated BLAST

Searching in Cupriavidus basilensis FW507-4G11 (Cup4G11)

Found 15 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Cupriavidus basilensis FW507-4G11, or try another query

RR42_RS06130: gluconate kinase
is similar to:

RR42_RS06130: Gluconokinase (EC from Cupriavidus basilensis

100% id,
100% cov

BPHYT_RS16720: Gluconokinase (EC from Burkholderia phytofirmans

55% id,
100% cov

GntK / b3437: D-gluconate kinase, thermostable (EC from Escherichia coli
gntK: gluconokinase; EC from Escherichia coli
gntK / P46859: D-gluconate kinase, thermostable (EC from Escherichia coli

42% id,
95% cov


RR42_RS10605: C4-dicarboxylate ABC transporter permease
is similar to:

Psest_2123: fusion of gluconokinase (EC and the small permease component of the D-gluconate TRAP transporter from Pseudomonas stutzeri

27% id,
44% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory