Curated BLAST for Genomes

 

Curated BLAST

Searching in Cupriavidus basilensis FW507-4G11 (Cup4G11)

Found 28 curated entries in PaperBLAST's database that match '2.7.2.1' as complete word(s).

These curated entries have 21 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Cupriavidus basilensis FW507-4G11, or try another query

RR42_RS22745: phosphoribosylglycinamide formyltransferase
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli

59% id,
95% cov

RR42_RS03800: acetate kinase
is similar to:
PaperBLAST

G4T0C7: acetate kinase (EC 2.7.2.1) from Methylomicrobium alcaliphilum

42% id,
100% cov

ACKA_THEMA / Q9WYB1: Acetate kinase; Acetokinase; EC 2.7.2.1 from Thermotoga maritima
ackA / PDB|2IIR_A: acetate kinase; EC 2.7.2.1 from Thermotoga maritima
Q9WYB1: acetate kinase (EC 2.7.2.1) from Thermotoga maritima

41% id,
98% cov

ACKA_CORGL / P77845: Acetate kinase; Acetokinase; EC 2.7.2.1 from Corynebacterium glutamicum

40% id,
97% cov

More...

RR42_RS03230: phosphoribosylaminoimidazole carboxylase
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli

27% id,
94% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

436726-437943 (frame +1) on NZ_CP010537
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli
Also see hits to annotated proteins above

59% id,
99% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory