Curated BLAST for Genomes

 

Curated BLAST

Searching in Cupriavidus basilensis FW507-4G11 (Cup4G11)

Found 11 curated entries in PaperBLAST's database that match '3.1.1.17' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Cupriavidus basilensis FW507-4G11, or try another query

RR42_RS30140: gluconolaconase
is similar to:
PaperBLAST

RGN_MOUSE / Q64374: Regucalcin; RC; Gluconolactonase; GNL; Senescence marker protein 30; SMP-30; EC 3.1.1.17 from Mus musculus
Q64374: gluconolactonase (EC 3.1.1.17) from Mus musculus

34% id,
93% cov

RGN_XENLA / Q9I922: Regucalcin; RC; Gluconolactonase; GNL; Senescence marker protein 30; SMP-30; xSMP-30; EC 3.1.1.17 from Xenopus laevis

34% id,
93% cov

RGN_HUMAN / Q15493: Regucalcin; RC; Gluconolactonase; GNL; Senescence marker protein 30; SMP-30; EC 3.1.1.17 from Homo sapiens
Q15493: gluconolactonase (EC 3.1.1.17) from Homo sapiens

34% id,
93% cov

More...

RR42_RS33665: gluconolactonase
is similar to:
PaperBLAST

RGN_RAT / Q03336: Regucalcin; RC; Gluconolactonase; GNL; Senescence marker protein 30; SMP-30; EC 3.1.1.17 from Rattus norvegicus
Rgn / Q03336: gluconolactonase (EC 3.1.1.17) from Rattus norvegicus

33% id,
94% cov

RGN_XENLA / Q9I922: Regucalcin; RC; Gluconolactonase; GNL; Senescence marker protein 30; SMP-30; xSMP-30; EC 3.1.1.17 from Xenopus laevis

31% id,
99% cov

RGN_MOUSE / Q64374: Regucalcin; RC; Gluconolactonase; GNL; Senescence marker protein 30; SMP-30; EC 3.1.1.17 from Mus musculus
Q64374: gluconolactonase (EC 3.1.1.17) from Mus musculus

32% id,
94% cov

More...

RR42_RS23435: gluconolactonase
is similar to:
PaperBLAST

GNL_ZYMMO / Q01578: Gluconolactonase; D-glucono-delta-lactone lactonohydrolase; EC 3.1.1.17 from Zymomonas mobilis
gnl / Q01578: gluconolactonase subunit (EC 3.1.1.17) from Zymomonas mobilis
Q01578: gluconolactonase (EC 3.1.1.17) from Zymomonas mobilis

33% id,
87% cov

RR42_RS09940: gluconolactonase
is similar to:
PaperBLAST

GNL_ZYMMO / Q01578: Gluconolactonase; D-glucono-delta-lactone lactonohydrolase; EC 3.1.1.17 from Zymomonas mobilis
gnl / Q01578: gluconolactonase subunit (EC 3.1.1.17) from Zymomonas mobilis
Q01578: gluconolactonase (EC 3.1.1.17) from Zymomonas mobilis

32% id,
85% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2120909-2122114 (frame -3) on NZ_CP010536
is similar to:
PaperBLAST

GNL_ZYMMO / Q01578: Gluconolactonase; D-glucono-delta-lactone lactonohydrolase; EC 3.1.1.17 from Zymomonas mobilis
gnl / Q01578: gluconolactonase subunit (EC 3.1.1.17) from Zymomonas mobilis
Q01578: gluconolactonase (EC 3.1.1.17) from Zymomonas mobilis
Also see hits to annotated proteins above

31% id,
99% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory