Curated BLAST for Genomes

 

Curated BLAST

Searching in Cupriavidus basilensis FW507-4G11 (Cup4G11)

Found 7 curated entries in PaperBLAST's database that match '3.1.1.57'.

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Cupriavidus basilensis FW507-4G11, or try another query

RR42_RS10620: amidohydrolase
is similar to:
PaperBLAST

D1MW98: 2-pyrone-4,6-dicarboxylate lactonase (EC 3.1.1.57) from Comamonas sp.

35% id,
90% cov

LIGI_COMTE / Q93PS7: 2-pyrone-4,6-dicarbaxylate hydrolase; PDC hydrolase; 2-pyrone-4,6-dicarboxylate lactonase; EC 3.1.1.57 from Comamonas testosteroni
pmdD / Q93PS7: 2-pyrone-4,6-dicarboxylate hydrolase (EC 3.1.1.57) from Comamonas testosteroni

35% id,
90% cov

proL / Q75T30: 2-pyrone-4,6-dicarboxylate hydrolase (EC 3.1.1.57) from Pseudomonas straminea

34% id,
90% cov

More...

RR42_RS23430: hypothetical protein
is similar to:
PaperBLAST

LIGI_SPHSK / O87170: 2-pyrone-4,6-dicarboxylate hydrolase; PDC hydrolase; 2-pyrone-4,6-dicarboxylate lactonase; EC 3.1.1.57 from Sphingobium sp.
ligI / O87170: 2-pyrone-4,6-dicarboxylate hydrolase (EC 3.1.1.57) from Sphingobium sp.
O87170: 2-pyrone-4,6-dicarboxylate lactonase (EC 3.1.1.57) from Sphingomonas paucimobilis

31% id,
89% cov

D1MW98: 2-pyrone-4,6-dicarboxylate lactonase (EC 3.1.1.57) from Comamonas sp.

30% id,
89% cov

LIGI_COMTE / Q93PS7: 2-pyrone-4,6-dicarbaxylate hydrolase; PDC hydrolase; 2-pyrone-4,6-dicarboxylate lactonase; EC 3.1.1.57 from Comamonas testosteroni
pmdD / Q93PS7: 2-pyrone-4,6-dicarboxylate hydrolase (EC 3.1.1.57) from Comamonas testosteroni

30% id,
89% cov

More...

RR42_RS15075: hypothetical protein
is similar to:
PaperBLAST

LIGI_COMTE / Q93PS7: 2-pyrone-4,6-dicarbaxylate hydrolase; PDC hydrolase; 2-pyrone-4,6-dicarboxylate lactonase; EC 3.1.1.57 from Comamonas testosteroni
pmdD / Q93PS7: 2-pyrone-4,6-dicarboxylate hydrolase (EC 3.1.1.57) from Comamonas testosteroni

30% id,
83% cov

proL / Q75T30: 2-pyrone-4,6-dicarboxylate hydrolase (EC 3.1.1.57) from Pseudomonas straminea

32% id,
70% cov

D1MW98: 2-pyrone-4,6-dicarboxylate lactonase (EC 3.1.1.57) from Comamonas sp.

31% id,
70% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory