Curated BLAST for Genomes

 

Curated BLAST

Searching in Cupriavidus basilensis FW507-4G11 (Cup4G11)

Found 46 curated entries in PaperBLAST's database that match '3.5.1.1' as complete word(s).

These curated entries have 37 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Cupriavidus basilensis FW507-4G11, or try another query

RR42_RS12000: isoaspartyl peptidase
is similar to:
PaperBLAST

P37595: beta-aspartyl-peptidase (EC 3.4.19.5); asparaginase (EC 3.5.1.1) from Escherichia coli

62% id,
97% cov

Q5JHT1: asparaginase (EC 3.5.1.1) from Thermococcus kodakarensis

45% id,
98% cov

CCNA_00096: asparaginase (EC 3.5.1.1) from Caulobacter crescentus

46% id,
93% cov

More...

RR42_RS12610: glutaminase
is similar to:
PaperBLAST

BPHYT_RS08815: L-asparaginase (EC 3.5.1.1) from Burkholderia phytofirmans

57% id,
95% cov

Q66CJ2: asparaginase (EC 3.5.1.1) from Yersinia pseudotuberculosis

43% id,
93% cov

Q9ZLB9: asparaginase (EC 3.5.1.1) from Helicobacter pylori

40% id,
98% cov

More...

RR42_RS26140: glutaminase
is similar to:
PaperBLAST

ASPG2_BACSU / O34482: L-asparaginase 2; L-ASNase 2; L-asparagine amidohydrolase 2; EC 3.5.1.1 from Bacillus subtilis

48% id,
100% cov

Q6Q4F4: asparaginase (EC 3.5.1.1) from Pectobacterium atrosepticum

49% id,
93% cov

Q6Q4F3: asparaginase (EC 3.5.1.1) from Dickeya chrysanthemi

47% id,
95% cov

More...

RR42_RS15275: ankyrin
is similar to:
PaperBLAST

ASPG_DIRIM / Q9U518: L-asparaginase; DiAsp; L-asparagine amidohydrolase; EC 3.5.1.1 from Dirofilaria immitis

27% id,
31% cov

LPP60_RAT / O88202: 60 kDa lysophospholipase; Lysophospholipase-transacylase; EC 3.1.1.5; EC 3.5.1.1; EC 3.1.1.47 from Rattus norvegicus

28% id,
29% cov

H0W0T5: asparaginase (EC 3.5.1.1) from Cavia porcellus

28% id,
25% cov

RR42_RS10880: ankyrin
is similar to:
PaperBLAST

LPP60_RAT / O88202: 60 kDa lysophospholipase; Lysophospholipase-transacylase; EC 3.1.1.5; EC 3.5.1.1; EC 3.1.1.47 from Rattus norvegicus

31% id,
21% cov

ASPG_DIRIM / Q9U518: L-asparaginase; DiAsp; L-asparagine amidohydrolase; EC 3.5.1.1 from Dirofilaria immitis

29% id,
22% cov

H0W0T5: asparaginase (EC 3.5.1.1) from Cavia porcellus

32% id,
14% cov

More...

RR42_RS05290: ankyrin
is similar to:
PaperBLAST

H0W0T5: asparaginase (EC 3.5.1.1) from Cavia porcellus

28% id,
19% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2707824-2708909 (frame -2) on NZ_CP010536
is similar to:
PaperBLAST

BPHYT_RS08815: L-asparaginase (EC 3.5.1.1) from Burkholderia phytofirmans
Also see hits to annotated proteins above

56% id,
98% cov

Q66CJ2: asparaginase (EC 3.5.1.1) from Yersinia pseudotuberculosis
Also see hits to annotated proteins above

43% id,
97% cov

ASPG2_ECOLI / P00805: L-asparaginase 2; L-asparaginase II; L-ASNase II; L-asparagine amidohydrolase II; Colaspase; EC 3.5.1.1 from Escherichia coli
AnsB / b2957: L-asparaginase 2 (EC 3.5.1.38; EC 3.5.1.1) from Escherichia coli
P00805: asparaginase (EC 3.5.1.1) from Escherichia coli
Also see hits to annotated proteins above

41% id,
97% cov

3304287-3305324 (frame +3) on NZ_CP010536
is similar to:
PaperBLAST

H0W0T5: asparaginase (EC 3.5.1.1) from Cavia porcellus
Also see hits to annotated proteins above

28% id,
44% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory