Curated BLAST for Genomes

 

Curated BLAST

Searching in Cupriavidus basilensis FW507-4G11 (Cup4G11)

Found 7 curated entries in PaperBLAST's database that match '3.5.3.8' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Cupriavidus basilensis FW507-4G11, or try another query

RR42_RS16900: N-formimino-L-glutamate deiminase
is similar to:
PaperBLAST

Q9HU77: formimidoylglutamate deiminase (EC 3.5.3.13); formimidoylglutamase (EC 3.5.3.8) from Pseudomonas aeruginosa

53% id,
100% cov

RR42_RS14625: formimidoylglutamase
is similar to:
PaperBLAST

HUTGL_PSEAE / Q9HZ59: Formimidoylglutamase; Formiminoglutamase; Formiminoglutamate hydrolase; EC 3.5.3.8 from Pseudomonas aeruginosa

51% id,
100% cov

BWI76_RS08725: Formiminoglutamase (EC 3.5.3.8) from Klebsiella michiganensis

48% id,
97% cov

HUTG_BACSU / P42068: Formimidoylglutamase; Formiminoglutamase; Formiminoglutamate hydrolase; N-formimino-L-glutamate formiminohydrolase; EC 3.5.3.8 from Bacillus subtilis

25% id,
90% cov

RR42_RS31730: formimidoylglutamase
is similar to:
PaperBLAST

HUTGL_PSEAE / Q9HZ59: Formimidoylglutamase; Formiminoglutamase; Formiminoglutamate hydrolase; EC 3.5.3.8 from Pseudomonas aeruginosa

50% id,
100% cov

BWI76_RS08725: Formiminoglutamase (EC 3.5.3.8) from Klebsiella michiganensis

49% id,
96% cov

Q4DSA0: formimidoylglutamase (EC 3.5.3.8) from Trypanosoma cruzi

33% id,
95% cov

RR42_RS02455: agmatinase
is similar to:
PaperBLAST

HUTG_BACSU / P42068: Formimidoylglutamase; Formiminoglutamase; Formiminoglutamate hydrolase; N-formimino-L-glutamate formiminohydrolase; EC 3.5.3.8 from Bacillus subtilis

26% id,
87% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory