Curated BLAST for Genomes

 

Curated BLAST

Searching in Cupriavidus basilensis FW507-4G11 (Cup4G11)

Found 59 curated entries in PaperBLAST's database that match '4.1.3.4'.

These curated entries have 34 distinct sequences.

Running ublast with E ≤ 0.01

Found 24 relevant proteins in Cupriavidus basilensis FW507-4G11, or try another query

RR42_RS31860: 4-hyroxy-2-oxovalerate aldolase
is similar to:
PaperBLAST

HOA4_PARXL / P51015: 4-hydroxy-2-oxovalerate aldolase 4; HOA 4; 4-hydroxy-2-keto-pentanoic acid aldolase 4; 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-oxopentanoate aldolase 4; EC 4.1.3.39; EC 4.1.3.43 from Paraburkholderia xenovorans
P51015: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39); 4-hydroxy-2-oxohexanoate aldolase (EC 4.1.3.43) from Paraburkholderia xenovorans

81% id,
97% cov

tesG / Q83VZ3: 4-hydroxy-2-oxohexanoate aldolase (EC 4.1.3.43) from Comamonas testosteroni

81% id,
97% cov

HOA_THET8 / Q53WI0: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39; EC 4.1.3.43 from Thermus thermophilus
Q53WI0: 4-hydroxy-2-oxohexanoate aldolase (EC 4.1.3.43) from Thermus thermophilus

52% id,
97% cov

More...

RR42_RS00955: hydroxymethylglutaryl-CoA lyase
is similar to:
PaperBLAST

LIUE_PSEAE / Q9I2A0: 3-hydroxy-3-isohexenylglutaryl-CoA/hydroxy-methylglutaryl-CoA lyase; HIHG-CoA lyase; HMG-CoA lyase; (S)-3-hydroxy-3-methylglutaryl-CoA acetoacetate-lyase; 3-hydroxy-3-(4-methylpent-3-en-1-yl)glutaryl-CoA acetate-lyase; EC 4.1.3.26; EC 4.1.3.4 from Pseudomonas aeruginosa
liuE / Q9I2A0: hydroxymethylglutaryl-CoA lyase subunit (EC 4.1.3.26; EC 4.1.3.4) from Pseudomonas aeruginosa

58% id,
100% cov

HMGCL_RAT / P97519: Hydroxymethylglutaryl-CoA lyase, mitochondrial; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Rattus norvegicus
P97519: hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) from Rattus norvegicus

61% id,
90% cov

HMGCL_MOUSE / P38060: Hydroxymethylglutaryl-CoA lyase, mitochondrial; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Mus musculus

60% id,
90% cov

More...

RR42_RS05095: 4-hyroxy-2-oxovalerate aldolase
is similar to:
PaperBLAST

HOA4_PARXL / P51015: 4-hydroxy-2-oxovalerate aldolase 4; HOA 4; 4-hydroxy-2-keto-pentanoic acid aldolase 4; 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-oxopentanoate aldolase 4; EC 4.1.3.39; EC 4.1.3.43 from Paraburkholderia xenovorans
P51015: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39); 4-hydroxy-2-oxohexanoate aldolase (EC 4.1.3.43) from Paraburkholderia xenovorans

59% id,
97% cov

tesG / Q83VZ3: 4-hydroxy-2-oxohexanoate aldolase (EC 4.1.3.43) from Comamonas testosteroni

58% id,
95% cov

HOA_THET8 / Q53WI0: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39; EC 4.1.3.43 from Thermus thermophilus
Q53WI0: 4-hydroxy-2-oxohexanoate aldolase (EC 4.1.3.43) from Thermus thermophilus

54% id,
94% cov

More...

RR42_RS27900: 4-hyroxy-2-oxovalerate aldolase
is similar to:
PaperBLAST

HOA4_PARXL / P51015: 4-hydroxy-2-oxovalerate aldolase 4; HOA 4; 4-hydroxy-2-keto-pentanoic acid aldolase 4; 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-oxopentanoate aldolase 4; EC 4.1.3.39; EC 4.1.3.43 from Paraburkholderia xenovorans
P51015: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39); 4-hydroxy-2-oxohexanoate aldolase (EC 4.1.3.43) from Paraburkholderia xenovorans

57% id,
97% cov

tesG / Q83VZ3: 4-hydroxy-2-oxohexanoate aldolase (EC 4.1.3.43) from Comamonas testosteroni

57% id,
95% cov

hsaF / Q0S815: 4-hydroxy-2-oxohexanoate aldolase (EC 4.1.3.43) from Rhodococcus jostii

51% id,
100% cov

More...

RR42_RS32625: 4-hyroxy-2-oxovalerate aldolase
is similar to:
PaperBLAST

HOA4_PARXL / P51015: 4-hydroxy-2-oxovalerate aldolase 4; HOA 4; 4-hydroxy-2-keto-pentanoic acid aldolase 4; 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-oxopentanoate aldolase 4; EC 4.1.3.39; EC 4.1.3.43 from Paraburkholderia xenovorans
P51015: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39); 4-hydroxy-2-oxohexanoate aldolase (EC 4.1.3.43) from Paraburkholderia xenovorans

55% id,
97% cov

tesG / Q83VZ3: 4-hydroxy-2-oxohexanoate aldolase (EC 4.1.3.43) from Comamonas testosteroni

54% id,
95% cov

HOA_THET8 / Q53WI0: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39; EC 4.1.3.43 from Thermus thermophilus
Q53WI0: 4-hydroxy-2-oxohexanoate aldolase (EC 4.1.3.43) from Thermus thermophilus

51% id,
97% cov

More...

RR42_RS28865: 2-dehydro-3-deoxyphosphogluconate aldolase
is similar to:
PaperBLAST

Kga / b1850: KHG/KDPG aldolase (EC 4.1.2.55; EC 4.1.2.14; EC 4.1.3.42; EC 4.1.1.112) from Escherichia coli
eda / P0A955: KHG/KDPG aldolase (EC 4.1.2.55; EC 4.1.3.42; EC 4.1.1.112) from Escherichia coli
P0A955: 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14); 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16); (4S)-4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.42) from Escherichia coli

51% id,
98% cov

RR42_RS28440: alanine racemase
is similar to:
PaperBLAST

BHCC_PARDP / A1B8Z1: 3-hydroxy-D-aspartate aldolase; beta-hydroxyaspartate aldolase; EC 4.1.3.41 from Paracoccus denitrificans

45% id,
95% cov

BHCC_PARDE / Q8GRC8: 3-hydroxy-D-aspartate aldolase; D-3-hydroxyaspartate aldolase; D-HAA; EC 4.1.3.41 from Paracoccus denitrificans
dhaa / Q8GRC8: D 3-hydroxyaspartate aldolase monomer (EC 4.1.3.41) from Paracoccus denitrificans
Q8GRC8: 3-hydroxy-D-aspartate aldolase (EC 4.1.3.41) from Paracoccus denitrificans

43% id,
95% cov

RR42_RS13255: hydroxymethylglutaryl-CoA lyase
is similar to:
PaperBLAST

HMGCL_BACSU / O34873: Hydroxymethylglutaryl-CoA lyase YngG; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Bacillus subtilis

43% id,
98% cov

CCL_CHLAA / A9WGE2: (R)-citramalyl-CoA lyase; EC 4.1.3.46 from Chloroflexus aurantiacus

43% id,
95% cov

SM_b21125: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) from Sinorhizobium meliloti

42% id,
95% cov

More...

RR42_RS12425: 3-hydroxy-3-methylglutaryl-CoA lyase
is similar to:
PaperBLAST

mvaB / GB|AAA25895.1: hydroxymethylglutaryl-CoA lyase; EC 4.1.3.4 from Pseudomonas mevalonii
mvaB / P13703: hydroxymethylglutaryl-CoA lyase monomer (EC 4.1.3.4) from Pseudomonas mevalonii

39% id,
96% cov

CCL_CHLAA / A9WGE2: (R)-citramalyl-CoA lyase; EC 4.1.3.46 from Chloroflexus aurantiacus

36% id,
99% cov

LIUE_PSEAE / Q9I2A0: 3-hydroxy-3-isohexenylglutaryl-CoA/hydroxy-methylglutaryl-CoA lyase; HIHG-CoA lyase; HMG-CoA lyase; (S)-3-hydroxy-3-methylglutaryl-CoA acetoacetate-lyase; 3-hydroxy-3-(4-methylpent-3-en-1-yl)glutaryl-CoA acetate-lyase; EC 4.1.3.26; EC 4.1.3.4 from Pseudomonas aeruginosa
liuE / Q9I2A0: hydroxymethylglutaryl-CoA lyase subunit (EC 4.1.3.26; EC 4.1.3.4) from Pseudomonas aeruginosa

37% id,
94% cov

More...

RR42_RS25280: 3-hydroxy-3-methylglutaryl-CoA lyase
is similar to:
PaperBLAST

HMGCL_BACSU / O34873: Hydroxymethylglutaryl-CoA lyase YngG; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Bacillus subtilis

38% id,
93% cov

CCL_CHLAA / A9WGE2: (R)-citramalyl-CoA lyase; EC 4.1.3.46 from Chloroflexus aurantiacus

37% id,
95% cov

SM_b21125: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) from Sinorhizobium meliloti

37% id,
95% cov

More...

RR42_RS36610: host specificity protein
is similar to:
PaperBLAST

A0A172MLA1: (S)-citramalyl-CoA lyase (EC 4.1.3.25); (R)-citramalyl-CoA lyase (EC 4.1.3.46) from Aspergillus terreus

33% id,
95% cov

RR42_RS25095: citryl-CoA lyase
is similar to:
PaperBLAST

A0A172MLA1: (S)-citramalyl-CoA lyase (EC 4.1.3.25); (R)-citramalyl-CoA lyase (EC 4.1.3.46) from Aspergillus terreus

32% id,
93% cov

RR42_RS24325: citryl-CoA lyase
is similar to:
PaperBLAST

A0A172MLA1: (S)-citramalyl-CoA lyase (EC 4.1.3.25); (R)-citramalyl-CoA lyase (EC 4.1.3.46) from Aspergillus terreus

31% id,
93% cov

RR42_RS24350: malyl-CoA thiolesterase
is similar to:
PaperBLAST

A0A172MLA1: (S)-citramalyl-CoA lyase (EC 4.1.3.25); (R)-citramalyl-CoA lyase (EC 4.1.3.46) from Aspergillus terreus

31% id,
94% cov

RR42_RS32740: enoyl-CoA hydratase
is similar to:
PaperBLAST

hlyA: 3-hydroxy-3-methylglutaryl-coenzyme A lyase/3-methylglutaconyl-coenzyme A hydratase; EC 4.1.3.4; EC 4.2.1.18 from Emericella nidulans

32% id,
46% cov

RR42_RS26900: enoyl-CoA hydratase
is similar to:
PaperBLAST

hlyA: 3-hydroxy-3-methylglutaryl-coenzyme A lyase/3-methylglutaconyl-coenzyme A hydratase; EC 4.1.3.4; EC 4.2.1.18 from Emericella nidulans

33% id,
41% cov

RR42_RS36335: enoyl-CoA hydratase
is similar to:
PaperBLAST

hlyA: 3-hydroxy-3-methylglutaryl-coenzyme A lyase/3-methylglutaconyl-coenzyme A hydratase; EC 4.1.3.4; EC 4.2.1.18 from Emericella nidulans

33% id,
41% cov

RR42_RS28425: 3-hydroxybutyryl-CoA dehydratase
is similar to:
PaperBLAST

hlyA: 3-hydroxy-3-methylglutaryl-coenzyme A lyase/3-methylglutaconyl-coenzyme A hydratase; EC 4.1.3.4; EC 4.2.1.18 from Emericella nidulans

33% id,
36% cov

RR42_RS28050: 3-hydroxypropionyl-CoA dehydratase
is similar to:
PaperBLAST

hlyA: 3-hydroxy-3-methylglutaryl-coenzyme A lyase/3-methylglutaconyl-coenzyme A hydratase; EC 4.1.3.4; EC 4.2.1.18 from Emericella nidulans

30% id,
40% cov

RR42_RS23450: enoyl-CoA hydratase
is similar to:
PaperBLAST

hlyA: 3-hydroxy-3-methylglutaryl-coenzyme A lyase/3-methylglutaconyl-coenzyme A hydratase; EC 4.1.3.4; EC 4.2.1.18 from Emericella nidulans

28% id,
38% cov

RR42_RS23710: enoyl-CoA hydratase
is similar to:
PaperBLAST

hlyA: 3-hydroxy-3-methylglutaryl-coenzyme A lyase/3-methylglutaconyl-coenzyme A hydratase; EC 4.1.3.4; EC 4.2.1.18 from Emericella nidulans

28% id,
37% cov

RR42_RS19815: enoyl-CoA hydratase
is similar to:
PaperBLAST

hlyA: 3-hydroxy-3-methylglutaryl-coenzyme A lyase/3-methylglutaconyl-coenzyme A hydratase; EC 4.1.3.4; EC 4.2.1.18 from Emericella nidulans

29% id,
34% cov

RR42_RS10265: 3-hydroxyacyl-CoA dehydrogenase
is similar to:
PaperBLAST

hlyA: 3-hydroxy-3-methylglutaryl-coenzyme A lyase/3-methylglutaconyl-coenzyme A hydratase; EC 4.1.3.4; EC 4.2.1.18 from Emericella nidulans

29% id,
28% cov

RR42_RS21205: 2-isopropylmalate synthase
is similar to:
PaperBLAST

HOA4_PARXL / P51015: 4-hydroxy-2-oxovalerate aldolase 4; HOA 4; 4-hydroxy-2-keto-pentanoic acid aldolase 4; 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-oxopentanoate aldolase 4; EC 4.1.3.39; EC 4.1.3.43 from Paraburkholderia xenovorans
P51015: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39); 4-hydroxy-2-oxohexanoate aldolase (EC 4.1.3.43) from Paraburkholderia xenovorans

26% id,
22% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 23 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1124669-1126552 (frame -3) on NZ_CP010536
is similar to:
PaperBLAST

HOA4_PARXL / P51015: 4-hydroxy-2-oxovalerate aldolase 4; HOA 4; 4-hydroxy-2-keto-pentanoic acid aldolase 4; 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-oxopentanoate aldolase 4; EC 4.1.3.39; EC 4.1.3.43 from Paraburkholderia xenovorans
P51015: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39); 4-hydroxy-2-oxohexanoate aldolase (EC 4.1.3.43) from Paraburkholderia xenovorans
Also see hits to annotated proteins above

58% id,
99% cov

HOA_MYCTU / P9WMK5: 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; 4-hydroxy-2-oxovalerate aldolase; HOA; EC 4.1.3.43; EC 4.1.3.39 from Mycobacterium tuberculosis
hsaF / P9WMK5: 4-hydroxy-2-oxohexanoate aldolase monomer (EC 4.1.3.43) from Mycobacterium tuberculosis
Also see hits to annotated proteins above

50% id,
98% cov

HMGCL_MOUSE / P38060: Hydroxymethylglutaryl-CoA lyase, mitochondrial; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Mus musculus
Also see hits to annotated proteins above

24% id,
96% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory