Curated BLAST for Genomes

 

Curated BLAST

Searching in Cupriavidus basilensis FW507-4G11 (Cup4G11)

Found 22 curated entries in PaperBLAST's database that match '4.2.1.22' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 16 relevant proteins in Cupriavidus basilensis FW507-4G11, or try another query

RR42_RS21960: cysteine synthase
is similar to:
PaperBLAST

F9UT54: cysteine synthase (EC 2.5.1.47); cystathionine beta-synthase (EC 4.2.1.22) from Lactobacillus plantarum

41% id,
98% cov

A0A1J9VES8: cysteine synthase (EC 2.5.1.47); cystathionine beta-synthase (EC 4.2.1.22) from Bacillus anthracis

38% id,
96% cov

cysK / P56067: cystathionine β-synthase (EC 4.2.1.22) from Helicobacter pylori

40% id,
88% cov

More...

RR42_RS11250: cysteine synthase
is similar to:
PaperBLAST

A0A1J9VES8: cysteine synthase (EC 2.5.1.47); cystathionine beta-synthase (EC 4.2.1.22) from Bacillus anthracis

38% id,
100% cov

F9UT54: cysteine synthase (EC 2.5.1.47); cystathionine beta-synthase (EC 4.2.1.22) from Lactobacillus plantarum

37% id,
95% cov

cysK / P56067: cystathionine β-synthase (EC 4.2.1.22) from Helicobacter pylori

33% id,
96% cov

More...

RR42_RS04535: cysteine synthase
is similar to:
PaperBLAST

F9UT54: cysteine synthase (EC 2.5.1.47); cystathionine beta-synthase (EC 4.2.1.22) from Lactobacillus plantarum

35% id,
99% cov

cysK / P56067: cystathionine β-synthase (EC 4.2.1.22) from Helicobacter pylori

35% id,
99% cov

A0A1J9VES8: cysteine synthase (EC 2.5.1.47); cystathionine beta-synthase (EC 4.2.1.22) from Bacillus anthracis

34% id,
98% cov

More...

RR42_RS31610: cystathionine beta-lyase
is similar to:
PaperBLAST

CTH / P32929: cystathionine γ-lyase monomer (EC 4.4.1.1; EC 4.4.1.2; EC 4.2.1.22) from Homo sapiens

36% id,
94% cov

RR42_RS14320: O-succinylhomoserine sulfhydrylase
is similar to:
PaperBLAST

CTH / P32929: cystathionine γ-lyase monomer (EC 4.4.1.1; EC 4.4.1.2; EC 4.2.1.22) from Homo sapiens

37% id,
85% cov

RR42_RS30610: cystathionine beta-lyase
is similar to:
PaperBLAST

CTH / P32929: cystathionine γ-lyase monomer (EC 4.4.1.1; EC 4.4.1.2; EC 4.2.1.22) from Homo sapiens

34% id,
93% cov

RR42_RS07655: cystathionine beta-lyase
is similar to:
PaperBLAST

CTH / P32929: cystathionine γ-lyase monomer (EC 4.4.1.1; EC 4.4.1.2; EC 4.2.1.22) from Homo sapiens

32% id,
85% cov

RR42_RS11750: inosine-5-monophosphate dehydrogenase
is similar to:
PaperBLAST

Q5SK23: cystathionine beta-synthase (EC 4.2.1.22) from Thermus thermophilus

29% id,
81% cov

RR42_RS14525: cysteine synthase
is similar to:
PaperBLAST

cysK / P56067: cystathionine β-synthase (EC 4.2.1.22) from Helicobacter pylori

26% id,
88% cov

RR42_RS02315: threonine dehydratase
is similar to:
PaperBLAST

cysK / P56067: cystathionine β-synthase (EC 4.2.1.22) from Helicobacter pylori

24% id,
91% cov

RR42_RS32610: O-acetylhomoserine aminocarboxypropyltransferase
is similar to:
PaperBLAST

CTH / P32929: cystathionine γ-lyase monomer (EC 4.4.1.1; EC 4.4.1.2; EC 4.2.1.22) from Homo sapiens

39% id,
51% cov

CTH / P32929: cystathionine γ-lyase monomer (EC 4.4.1.1; EC 4.4.1.2; EC 4.2.1.22) from Homo sapiens

40% id,
39% cov

RR42_RS06465: O-acetylhomoserine aminocarboxypropyltransferase
is similar to:
PaperBLAST

CTH / P32929: cystathionine γ-lyase monomer (EC 4.4.1.1; EC 4.4.1.2; EC 4.2.1.22) from Homo sapiens

36% id,
52% cov

CTH / P32929: cystathionine γ-lyase monomer (EC 4.4.1.1; EC 4.4.1.2; EC 4.2.1.22) from Homo sapiens

40% id,
39% cov

RR42_RS05695: pyridoxal-5'-phosphate-dependent protein subunit beta
is similar to:
PaperBLAST

CBS_HUMAN / P35520: Cystathionine beta-synthase; Beta-thionase; Serine sulfhydrase; EC 4.2.1.22 from Homo sapiens
CBS / P35520: cystathionine β-synthase monomer (EC 4.2.1.22) from Homo sapiens
P35520: cystathionine beta-synthase (EC 4.2.1.22) from Homo sapiens

26% id,
56% cov

CBS_RAT / P32232: Cystathionine beta-synthase; Beta-thionase; Hemoprotein H-450; Serine sulfhydrase; EC 4.2.1.22 from Rattus norvegicus
Cbs / P32232: cystathionine β-synthase subunit (EC 4.2.1.22) from Rattus norvegicus

25% id,
53% cov

RR42_RS11110: serine dehydratase
is similar to:
PaperBLAST

CBS_HUMAN / P35520: Cystathionine beta-synthase; Beta-thionase; Serine sulfhydrase; EC 4.2.1.22 from Homo sapiens
CBS / P35520: cystathionine β-synthase monomer (EC 4.2.1.22) from Homo sapiens
P35520: cystathionine beta-synthase (EC 4.2.1.22) from Homo sapiens

27% id,
52% cov

CBS_RAT / P32232: Cystathionine beta-synthase; Beta-thionase; Hemoprotein H-450; Serine sulfhydrase; EC 4.2.1.22 from Rattus norvegicus
Cbs / P32232: cystathionine β-synthase subunit (EC 4.2.1.22) from Rattus norvegicus

28% id,
52% cov

RR42_RS11635: signal transduction protein
is similar to:
PaperBLAST

Q5SK23: cystathionine beta-synthase (EC 4.2.1.22) from Thermus thermophilus

31% id,
45% cov

RR42_RS00320: histidine kinase
is similar to:
PaperBLAST

Q5SK23: cystathionine beta-synthase (EC 4.2.1.22) from Thermus thermophilus

37% id,
28% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 15 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2470881-2472332 (frame -2) on NZ_CP010537
is similar to:
PaperBLAST

CTH / P32929: cystathionine γ-lyase monomer (EC 4.4.1.1; EC 4.4.1.2; EC 4.2.1.22) from Homo sapiens
Also see hits to annotated proteins above

36% id,
98% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory