Curated BLAST for Genomes

 

Curated BLAST

Searching in Cupriavidus basilensis FW507-4G11 (Cup4G11)

Found 64 curated entries in PaperBLAST's database that match '4.2.1.3' as complete word(s).

These curated entries have 50 distinct sequences.

Running ublast with E ≤ 0.01

Found 15 relevant proteins in Cupriavidus basilensis FW507-4G11, or try another query

RR42_RS11270: aconitate hydratase
is similar to:
PaperBLAST

ACND_SHEON / Q8EJW3: 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming); Aconitate hydratase; ACN; Aconitase; EC 4.2.1.117; EC 4.2.1.3 from Shewanella oneidensis

86% id,
99% cov

ACNA_CUPNE / Q937N8: Aconitate hydratase A; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Cupriavidus necator

85% id,
100% cov

ACNA_THET8 / Q5SMF6: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Thermus thermophilus

47% id,
96% cov

More...

RR42_RS14485: 2-methylcitrate dehydratase
is similar to:
PaperBLAST

PRPD_CUPNE / Q937N6: 2-methylcitrate dehydratase; 2-MC dehydratase; Aconitate hydratase; ACN; Aconitase; EC 4.2.1.79; EC 4.2.1.3 from Cupriavidus necator

86% id,
99% cov

PRPD_SALTY / P74840: 2-methylcitrate dehydratase; 2-MC dehydratase; Aconitate hydratase; ACN; Aconitase; EC 4.2.1.79; EC 4.2.1.3 from Salmonella typhimurium

81% id,
100% cov

PRPD_ECOLI / P77243: 2-methylcitrate dehydratase; 2-MC dehydratase; (2S,3S)-2-methylcitrate dehydratase; Aconitate hydratase; ACN; Aconitase; EC 4.2.1.79; EC 4.2.1.3 from Escherichia coli

81% id,
100% cov

More...

RR42_RS14490: aconitate hydratase
is similar to:
PaperBLAST

A0A090AMG4: aconitate hydratase (EC 4.2.1.3) from Achromobacter denitrificans

81% id,
100% cov

ACNA_THET8 / Q5SMF6: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Thermus thermophilus

56% id,
99% cov

ACNA_BRADU / P70920: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Bradyrhizobium diazoefficiens

55% id,
99% cov

More...

RR42_RS23515: bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
is similar to:
PaperBLAST

ACNB_ECOLI / P36683: Aconitate hydratase B; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; 2-methyl-cis-aconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Escherichia coli
acnB / GB|AAZ86920.1: aconitate hydratas; EC 4.2.1.3 from Escherichia coli
P36683: aconitate hydratase (EC 4.2.1.3) from Escherichia coli

74% id,
99% cov

ACNB_SALTY / Q8ZRS8: Aconitate hydratase B; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; 2-methyl-cis-aconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Salmonella typhimurium

74% id,
99% cov

A0A2X5AHR8: aconitate hydratase (EC 4.2.1.3) from Helicobacter pylori

61% id,
100% cov

More...

RR42_RS33965: 3-isopropylmalate dehydratase
is similar to:
PaperBLAST

Q8RP87: aconitate hydratase (EC 4.2.1.3) from Bacteroides fragilis

28% id,
60% cov

ACON_YEAST / P19414: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Saccharomyces cerevisiae
P19414: aconitate hydratase (EC 4.2.1.3) from Saccharomyces cerevisiae

29% id,
57% cov

ACON_ASPFU / Q4WLN1: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; Homocitrate dehydratase; EC 4.2.1.3; EC 4.2.1.- from Neosartorya fumigata

29% id,
57% cov

More...

RR42_RS14400: isopropylmalate isomerase
is similar to:
PaperBLAST

ACO1: aconitate hydratase; EC 4.2.1.3 from Candida albicans

28% id,
56% cov

ACON_YEAST / P19414: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Saccharomyces cerevisiae
P19414: aconitate hydratase (EC 4.2.1.3) from Saccharomyces cerevisiae

27% id,
57% cov

ACOHC_BOVIN / Q0VCU1: Cytoplasmic aconitate hydratase; Aconitase; Citrate hydro-lyase; Iron-responsive element-binding protein 1; IRE-BP 1; EC 4.2.1.3 from Bos taurus

27% id,
50% cov

More...

RR42_RS22770: 3-isopropylmalate dehydratase
is similar to:
PaperBLAST

ACNA_ECOLI / P25516: Aconitate hydratase A; ACN; Aconitase; Iron-responsive protein-like; IRP-like; RNA-binding protein; Stationary phase enzyme; EC 4.2.1.3 from Escherichia coli
acnA: aconitate hydratase 1; EC 4.2.1.3 from Escherichia coli
P25516: aconitate hydratase (EC 4.2.1.3) from Escherichia coli

28% id,
56% cov

ACNA_SALTY / Q8ZP52: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; 2-methyl-cis-aconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Salmonella typhimurium

28% id,
56% cov

ACOHC_CAEEL / Q23500: Cytoplasmic aconitate hydratase; Aconitase; Citrate hydro-lyase; Gex-3-interacting protein 22; EC 4.2.1.3 from Caenorhabditis elegans
Q23500: aconitate hydratase (EC 4.2.1.3) from Caenorhabditis elegans

27% id,
55% cov

More...

RR42_RS24175: isopropylmalate isomerase
is similar to:
PaperBLAST

ACO1: aconitate hydratase; EC 4.2.1.3 from Candida albicans

27% id,
56% cov

ACON_YEAST / P19414: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Saccharomyces cerevisiae
P19414: aconitate hydratase (EC 4.2.1.3) from Saccharomyces cerevisiae

27% id,
57% cov

A0A090AMG4: aconitate hydratase (EC 4.2.1.3) from Achromobacter denitrificans

27% id,
44% cov

RR42_RS21085: 3-isopropylmalate dehydratase
is similar to:
PaperBLAST

ACND_SHEON / Q8EJW3: 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming); Aconitate hydratase; ACN; Aconitase; EC 4.2.1.117; EC 4.2.1.3 from Shewanella oneidensis

26% id,
58% cov

ACON_RAT / Q9ER34: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Rattus norvegicus
Q9ER34: aconitate hydratase (EC 4.2.1.3) from Rattus norvegicus

26% id,
57% cov

Q99KI0: aconitate hydratase (EC 4.2.1.3) from Mus musculus

26% id,
57% cov

More...

RR42_RS01530: isopropylmalate isomerase
is similar to:
PaperBLAST

ACOHC_CAEEL / Q23500: Cytoplasmic aconitate hydratase; Aconitase; Citrate hydro-lyase; Gex-3-interacting protein 22; EC 4.2.1.3 from Caenorhabditis elegans
Q23500: aconitate hydratase (EC 4.2.1.3) from Caenorhabditis elegans

26% id,
55% cov

A0A090AMG4: aconitate hydratase (EC 4.2.1.3) from Achromobacter denitrificans

24% id,
54% cov

ACNA_THET8 / Q5SMF6: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Thermus thermophilus

24% id,
54% cov

More...

RR42_RS01535: 3-isopropylmalate dehydratase
is similar to:
PaperBLAST

ACNA_THET8 / Q5SMF6: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Thermus thermophilus

28% id,
21% cov

HP15_3433: Aconitate hydratase (EC 4.2.1.3) from Marinobacter adhaerens

27% id,
19% cov

ACNA_BACSU / P09339: Aconitate hydratase A; ACN; Aconitase; Aconitate/2-methylaconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.- from Bacillus subtilis
citB / P09339: aconitate hydratase (bifunctional aconitase) (EC 4.2.1.99; EC 4.2.1.3) from Bacillus subtilis
P09339: aconitate hydratase (EC 4.2.1.3) from Bacillus subtilis

28% id,
17% cov

More...

RR42_RS21080: 3-isopropylmalate dehydratase
is similar to:
PaperBLAST

ACO3M_ARATH / Q9SIB9: Aconitate hydratase 3, mitochondrial; Aconitase 3; mACO1; Citrate hydro-lyase 3; EC 4.2.1.3 from Arabidopsis thaliana
Q9SIB9: aconitate hydratase (EC 4.2.1.3) from Arabidopsis thaliana

27% id,
19% cov

D3GQL1: aconitate hydratase (EC 4.2.1.3) from Citrus clementina

28% id,
16% cov

ACNA_CUPNE / Q937N8: Aconitate hydratase A; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Cupriavidus necator

27% id,
15% cov

More...

RR42_RS22775: 3-isopropylmalate dehydratase
is similar to:
PaperBLAST

Q9RIL1: aconitate hydratase (EC 4.2.1.3) from Streptomyces viridochromogenes

39% id,
11% cov

ACND_SHEON / Q8EJW3: 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming); Aconitate hydratase; ACN; Aconitase; EC 4.2.1.117; EC 4.2.1.3 from Shewanella oneidensis

31% id,
11% cov

ACNA_SALTY / Q8ZP52: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; 2-methyl-cis-aconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Salmonella typhimurium

34% id,
10% cov

More...

RR42_RS24180: 3-isopropylmalate dehydratase
is similar to:
PaperBLAST

ACON_SCHPO / O13966: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Schizosaccharomyces pombe

31% id,
14% cov

ACON_YEAST / P19414: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Saccharomyces cerevisiae
P19414: aconitate hydratase (EC 4.2.1.3) from Saccharomyces cerevisiae

46% id,
7% cov

ACO1: aconitate hydratase; EC 4.2.1.3 from Candida albicans

46% id,
6% cov

More...

RR42_RS14390: 3-isopropylmalate dehydratase
is similar to:
PaperBLAST

ACON_ASPFU / Q4WLN1: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; Homocitrate dehydratase; EC 4.2.1.3; EC 4.2.1.- from Neosartorya fumigata

35% id,
12% cov

ACON_HUMAN / Q99798: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Homo sapiens
Q99798: aconitate hydratase (EC 4.2.1.3) from Homo sapiens

39% id,
10% cov

ACON_SCHPO / O13966: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Schizosaccharomyces pombe

37% id,
10% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 15 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory