Curated BLAST for Genomes

 

Curated BLAST

Searching in Cupriavidus basilensis FW507-4G11 (Cup4G11)

Found 28 curated entries in PaperBLAST's database that match '4.2.1.8' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Cupriavidus basilensis FW507-4G11, or try another query

RR42_RS34970: bifunctional D-altronate/D-mannonate dehydratase
is similar to:
PaperBLAST

MAND_RHIWR / A5V6Z0: D-mannonate dehydratase; ManD; EC 4.2.1.8 from Rhizorhabdus wittichii

82% id,
100% cov

MAND1_CAUVC / Q9A4L8: D-mannonate dehydratase CC2812; ManD; EC 4.2.1.8 from Caulobacter vibrioides

75% id,
100% cov

MAND2_CAUSK / B0T4L2: D-mannonate dehydratase Caul1835; ManD; EC 4.2.1.8 from Caulobacter sp.

75% id,
100% cov

More...

RR42_RS22655: mandelate racemase
is similar to:
PaperBLAST

MAND_CELJU / B3PDB1: D-galactonate dehydratase family member RspA; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.8 from Cellvibrio japonicus

27% id,
96% cov

MAND_MARMS / A6VRA1: D-galactonate dehydratase family member Mmwyl1_0037; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Marinomonas sp.

26% id,
94% cov

MAND_RHIWR / A5V6Z0: D-mannonate dehydratase; ManD; EC 4.2.1.8 from Rhizorhabdus wittichii

27% id,
90% cov

More...

RR42_RS23065: L-rhamnose 1-epimerase
is similar to:
PaperBLAST

MAND_SPHSS / Q1NAJ2: D-mannonate dehydratase; ManD; EC 4.2.1.8 from Sphingomonas sp.

27% id,
92% cov

MAND1_CAUSK / B0T0B1: D-mannonate dehydratase Caul1427; ManD; EC 4.2.1.8 from Caulobacter sp.

26% id,
91% cov

MAND_RHIWR / A5V6Z0: D-mannonate dehydratase; ManD; EC 4.2.1.8 from Rhizorhabdus wittichii

26% id,
92% cov

More...

RR42_RS34985: mandelate racemase
is similar to:
PaperBLAST

MAND_STRS3 / D9UNB2: D-galactonate dehydratase family member SSLG_02014; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Streptomyces sp.

27% id,
87% cov

DMGD_CHRSD / Q1QT89: D-galactonate dehydratase family member ManD; D-gluconate dehydratase; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Chromohalobacter salexigens

28% id,
48% cov

DMGD_HALED / E1V4Y0: D-galactonate dehydratase family member RspA; D-gluconate dehydratase; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Halomonas elongata

31% id,
43% cov

More...

RR42_RS23175: mandelate racemase
is similar to:
PaperBLAST

MAND_NOVAD / A4XF23: D-mannonate dehydratase; ManD; RspA homolog; EC 4.2.1.8 from Novosphingobium aromaticivorans

25% id,
94% cov

MAND2_CAUVC / Q9AAR4: D-mannonate dehydratase CC0532; ManD; EC 4.2.1.8 from Caulobacter vibrioides
A0A0H3C643: mannonate dehydratase (EC 4.2.1.8) from Caulobacter vibrioides

24% id,
94% cov

DMGD_MUSP7 / C6CBG9: D-galactonate dehydratase family member Dd703_0947; D-gluconate dehydratase; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Musicola paradisiaca

24% id,
87% cov

More...

RR42_RS33065: mandelate racemase
is similar to:
PaperBLAST

MAND_NOVAD / A4XF23: D-mannonate dehydratase; ManD; RspA homolog; EC 4.2.1.8 from Novosphingobium aromaticivorans

24% id,
93% cov

MAND1_CAUVC / Q9A4L8: D-mannonate dehydratase CC2812; ManD; EC 4.2.1.8 from Caulobacter vibrioides

23% id,
74% cov

DMGD_HALED / E1V4Y0: D-galactonate dehydratase family member RspA; D-gluconate dehydratase; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Halomonas elongata

26% id,
60% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory