Curated BLAST for Genomes

 

Curated BLAST

Searching in Cupriavidus basilensis FW507-4G11 (Cup4G11)

Found 22 curated entries in PaperBLAST's database that match '4.3.1.18' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Cupriavidus basilensis FW507-4G11, or try another query

RR42_RS11110: serine dehydratase
is similar to:
PaperBLAST

SRR_SCHPO / O59791: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Schizosaccharomyces pombe

69% id,
98% cov

Q54HH2: D-Serine ammonia-lyase (EC 4.3.1.18) from Dictyostelium discoideum

42% id,
98% cov

SRR_ARATH / Q2PGG3: Serine racemase; AtSR; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Arabidopsis thaliana

44% id,
93% cov

More...

RR42_RS28450: serine dehydratase
is similar to:
PaperBLAST

Q9HYN9: D-Serine ammonia-lyase (EC 4.3.1.18) from Pseudomonas aeruginosa

52% id,
96% cov

PfGW456L13_3648: D-serine ammonia-lyase (EC 4.3.1.18) from Pseudomonas fluorescens

50% id,
97% cov

SDHD_ECOLI / P00926: D-serine dehydratase; D-serine deaminase; DSD; EC 4.3.1.18 from Escherichia coli
DsdA / b2366: D-serine ammonia-lyase (EC 4.3.1.18) from Escherichia coli
dsdA / P00926: D-serine ammonia-lyase (EC 4.3.1.18) from Escherichia coli
P00926: D-Serine ammonia-lyase (EC 4.3.1.18) from Escherichia coli

47% id,
99% cov

More...

RR42_RS33450: alanine racemase
is similar to:
PaperBLAST

DSD1_CHICK / A0A8V1ABE9: D-serine dehydratase; EC 4.3.1.18 from Gallus gallus

35% id,
98% cov

DSD1_YEAST / P53095: D-serine dehydratase; D-serine deaminase; DSD; EC 4.3.1.18 from Saccharomyces cerevisiae
P53095: D-Serine ammonia-lyase (EC 4.3.1.18) from Saccharomyces cerevisiae

27% id,
97% cov

RR42_RS05695: pyridoxal-5'-phosphate-dependent protein subunit beta
is similar to:
PaperBLAST

SRR_ORYSJ / Q7XSN8: Serine racemase; D-serine dehydratase; D-serine ammonia-lyase; L-serine dehydratase; L-serine ammonia-lyase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Oryza sativa

35% id,
96% cov

SRR_SCHPO / O59791: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Schizosaccharomyces pombe

34% id,
98% cov

Q54HH2: D-Serine ammonia-lyase (EC 4.3.1.18) from Dictyostelium discoideum

33% id,
98% cov

More...

RR42_RS02315: threonine dehydratase
is similar to:
PaperBLAST

SRR_SCHPO / O59791: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Schizosaccharomyces pombe

34% id,
97% cov

SRR_RAT / Q76EQ0: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Rattus norvegicus

31% id,
94% cov

Q54HH2: D-Serine ammonia-lyase (EC 4.3.1.18) from Dictyostelium discoideum

31% id,
93% cov

More...

RR42_RS32990: 1-aminocyclopropane-1-carboxylate deaminase
is similar to:
PaperBLAST

O57809: L-serine ammonia-lyase (EC 4.3.1.17); D-Serine ammonia-lyase (EC 4.3.1.18) from Pyrococcus horikoshii

34% id,
95% cov

RR42_RS33880: serine dehydratase
is similar to:
PaperBLAST

SRR_MOUSE / Q9QZX7: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Mus musculus

29% id,
88% cov

SRR_RAT / Q76EQ0: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Rattus norvegicus

29% id,
90% cov

SRR_HUMAN / Q9GZT4: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Homo sapiens

29% id,
88% cov

More...

RR42_RS21960: cysteine synthase
is similar to:
PaperBLAST

SRR_RAT / Q76EQ0: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Rattus norvegicus

27% id,
84% cov

SRR_MOUSE / Q9QZX7: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Mus musculus

27% id,
82% cov

Q54HH2: D-Serine ammonia-lyase (EC 4.3.1.18) from Dictyostelium discoideum

24% id,
85% cov

More...

RR42_RS14525: cysteine synthase
is similar to:
PaperBLAST

SRR_RAT / Q76EQ0: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Rattus norvegicus

25% id,
65% cov

SRR_HUMAN / Q9GZT4: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Homo sapiens

25% id,
62% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2802651-2803778 (frame -2) on NZ_CP010537
is similar to:
PaperBLAST

O57809: L-serine ammonia-lyase (EC 4.3.1.17); D-Serine ammonia-lyase (EC 4.3.1.18) from Pyrococcus horikoshii
Also see hits to annotated proteins above

34% id,
98% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory