Curated BLAST for Genomes


Curated BLAST

Searching in Cupriavidus basilensis FW507-4G11 (Cup4G11)

Found 90 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 59 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Cupriavidus basilensis FW507-4G11, or try another query

RR42_RS05495: triosephosphate isomerase
is similar to:

TPIS_THET8 / Q5SJR1: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC from Thermus thermophilus

51% id,
98% cov

TPIS_CAEEL / Q10657: Triosephosphate isomerase; TIM; Methylglyoxal synthase; Triose-phosphate isomerase; EC; EC from Caenorhabditis elegans
Q10657: triose-phosphate isomerase (EC from Caenorhabditis elegans

50% id,
98% cov

TPIS_DEIRA / Q9RUP5: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC from Deinococcus radiodurans

48% id,
99% cov


RR42_RS03200: phosphoglycerate kinase
is similar to:

PGKT_THEMA / P36204: Bifunctional PGK/TIM; EC; EC from Thermotoga maritima
pgk / P36204: Pgk (EC; EC from Thermotoga maritima
P36204: triose-phosphate isomerase (EC from Thermotoga maritima

45% id,
59% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory