Curated BLAST for Genomes

 

Curated BLAST

Searching in Cupriavidus basilensis FW507-4G11 (Cup4G11)

Found 88 curated entries in PaperBLAST's database that match '5.4.99.5'.

These curated entries have 59 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Cupriavidus basilensis FW507-4G11, or try another query

RR42_RS04460: chorismate mutase
is similar to:
PaperBLAST

CMPDT_PSEST / P27603: Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 from Pseudomonas stutzeri

47% id,
98% cov

C7EXK8: prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Escherichia coli

32% id,
97% cov

CMPDT_ECOLI / P0A9J8: Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 from Escherichia coli
PheA / b2599: fused chorismate mutase/prephenate dehydratase (EC 5.4.99.5; EC 4.2.1.51) from Escherichia coli
CH_024084: P-protein; EC 4.2.1.51; EC 5.4.99.5 from Escherichia coli
pheA / P0A9J8: fused chorismate mutase/prephenate dehydratase (EC 5.4.99.5; EC 4.2.1.51) from Escherichia coli

32% id,
97% cov

More...

RR42_RS32260: squalene--hopene cyclase
is similar to:
PaperBLAST

FRIES_KALDA / E2IUA8: Friedelin synthase; KdFRS; EC 5.4.99.50 from Kalanchoe daigremontiana
FRS / E2IUA8: friedelin synthase (EC 5.4.99.50; EC 5.4.99.39; EC 5.4.99.35) from Kalanchoe daigremontiana

26% id,
89% cov

GLS / E2IUA7: glutinol synthase (EC 5.4.99.49; EC 5.4.99.39; EC 5.4.99.50; EC 5.4.99.35) from Kalanchoe daigremontiana

26% id,
88% cov

A0A2R3ZF24: friedelin synthase (EC 5.4.99.50) from Monteverdia ilicifolia

26% id,
85% cov

More...

RR42_RS17265: aminodeoxychorismate synthase
is similar to:
PaperBLAST

MBTI_MYCTU / P9WFX1: Salicylate synthase; Chorismate mutase; CM; Isochorismate synthase/isochorismate lyase; Mycobactin synthase protein; EC 5.4.99.5; EC 4.2.99.21; EC 5.4.4.2 from Mycobacterium tuberculosis

28% id,
79% cov

RR42_RS18295: anthranilate synthase component I
is similar to:
PaperBLAST

MBTI_MYCTU / P9WFX1: Salicylate synthase; Chorismate mutase; CM; Isochorismate synthase/isochorismate lyase; Mycobactin synthase protein; EC 5.4.99.5; EC 4.2.99.21; EC 5.4.4.2 from Mycobacterium tuberculosis

31% id,
67% cov

RR42_RS06165: 2-dehydro-3-deoxyphosphooctonate aldolase
is similar to:
PaperBLAST

P39912: chorismate mutase (EC 5.4.99.5) from Bacillus subtilis

30% id,
68% cov

RR42_RS28595: squalene--hopene cyclase
is similar to:
PaperBLAST

BARS1_ARATH / O23390: Baruol synthase; AtBARS1; Pentacyclic triterpene synthase 2; AtPEN2; EC 5.4.99.57 from Arabidopsis thaliana
BARS1 / O23390: baruol synthase (EC 5.4.99.57) from Arabidopsis thaliana

27% id,
51% cov

DAMS_SOLLC / E7DN64: Delta-amyrin synthase; Alpha-amyrin synthase; Beta-amyrin synthase; Triterpenoid synthase 2; SlTTS2; EC 5.4.99.55; EC 5.4.99.40; EC 5.4.99.39 from Solanum lycopersicum
TTS2 / E7DN64: δ-amyrin synthase (EC 5.4.99.55; EC 5.4.99.40; EC 5.4.99.39) from Solanum lycopersicum

29% id,
46% cov

GLS / E2IUA7: glutinol synthase (EC 5.4.99.49; EC 5.4.99.39; EC 5.4.99.50; EC 5.4.99.35) from Kalanchoe daigremontiana

28% id,
46% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2625024-2627111 (frame -2) on NZ_CP010537
is similar to:
PaperBLAST

FRIES_KALDA / E2IUA8: Friedelin synthase; KdFRS; EC 5.4.99.50 from Kalanchoe daigremontiana
FRS / E2IUA8: friedelin synthase (EC 5.4.99.50; EC 5.4.99.39; EC 5.4.99.35) from Kalanchoe daigremontiana
Also see hits to annotated proteins above

26% id,
90% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory