Curated BLAST for Genomes

 

Curated BLAST

Searching in Cupriavidus basilensis FW507-4G11 (Cup4G11)

Found 1 curated entries in PaperBLAST's database that match '2-deoxy-3-keto-D-ribonate cleavage enzyme' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Cupriavidus basilensis FW507-4G11, or try another query

RR42_RS33585: 3-keto-5-aminohexanoate cleavage protein
is similar to:
PaperBLAST

H281DRAFT_00641: 2-deoxy-3-keto-D-ribonate cleavage enzyme from Paraburkholderia bryophila

70% id,
98% cov

RR42_RS25175: 3-keto-5-aminohexanoate cleavage protein
is similar to:
PaperBLAST

H281DRAFT_00641: 2-deoxy-3-keto-D-ribonate cleavage enzyme from Paraburkholderia bryophila

59% id,
98% cov

RR42_RS24450: 3-keto-5-aminohexanoate cleavage protein
is similar to:
PaperBLAST

H281DRAFT_00641: 2-deoxy-3-keto-D-ribonate cleavage enzyme from Paraburkholderia bryophila

57% id,
97% cov

RR42_RS34675: NADPH:quinone reductase
is similar to:
PaperBLAST

H281DRAFT_00641: 2-deoxy-3-keto-D-ribonate cleavage enzyme from Paraburkholderia bryophila

35% id,
97% cov

H281DRAFT_00641: 2-deoxy-3-keto-D-ribonate cleavage enzyme from Paraburkholderia bryophila

39% id,
37% cov

RR42_RS10310: NADPH:quinone reductase
is similar to:
PaperBLAST

H281DRAFT_00641: 2-deoxy-3-keto-D-ribonate cleavage enzyme from Paraburkholderia bryophila

34% id,
96% cov

RR42_RS32490: 3-keto-5-aminohexanoate cleavage protein
is similar to:
PaperBLAST

H281DRAFT_00641: 2-deoxy-3-keto-D-ribonate cleavage enzyme from Paraburkholderia bryophila

27% id,
95% cov

H281DRAFT_00641: 2-deoxy-3-keto-D-ribonate cleavage enzyme from Paraburkholderia bryophila

34% id,
36% cov

RR42_RS23480: 3-keto-5-aminohexanoate cleavage protein
is similar to:
PaperBLAST

H281DRAFT_00641: 2-deoxy-3-keto-D-ribonate cleavage enzyme from Paraburkholderia bryophila

35% id,
37% cov

RR42_RS31045: class III aminotransferase
is similar to:
PaperBLAST

H281DRAFT_00641: 2-deoxy-3-keto-D-ribonate cleavage enzyme from Paraburkholderia bryophila

29% id,
34% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory