Curated BLAST for Genomes

 

Curated BLAST

Searching in Cupriavidus basilensis FW507-4G11 (Cup4G11)

Found 4 curated entries in PaperBLAST's database that match 'carbamoyl-phosphate synthase%large' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Cupriavidus basilensis FW507-4G11, or try another query

RR42_RS13510: carbamoyl phosphate synthase large subunit
is similar to:
PaperBLAST

CARB_ARATH / Q42601: Carbamoyl-phosphate synthase large chain, chloroplastic; Carbamoyl-phosphate synthetase ammonia chain; Protein VENOSA 3; EC 6.3.5.5 from Arabidopsis thaliana

58% id,
91% cov

CARB_BACSU / P25994: Carbamoyl-phosphate synthase pyrimidine-specific large chain; Carbamoyl-phosphate synthetase ammonia chain; EC 6.3.5.5 from Bacillus subtilis

50% id,
98% cov

carB / CAB56843.1: carbamoyl-phosphate synthase large subunit from Lactobacillus plantarum

45% id,
99% cov

More...

RR42_RS25655: pyruvate carboxylase
is similar to:
PaperBLAST

carB / CAB56843.1: carbamoyl-phosphate synthase large subunit from Lactobacillus plantarum

25% id,
27% cov

CARB_BACSU / P25994: Carbamoyl-phosphate synthase pyrimidine-specific large chain; Carbamoyl-phosphate synthetase ammonia chain; EC 6.3.5.5 from Bacillus subtilis

23% id,
27% cov

RR42_RS25130: pyruvate carboxylase
is similar to:
PaperBLAST

CARB_BACSU / P25994: Carbamoyl-phosphate synthase pyrimidine-specific large chain; Carbamoyl-phosphate synthetase ammonia chain; EC 6.3.5.5 from Bacillus subtilis

23% id,
29% cov

carB / CAB56843.1: carbamoyl-phosphate synthase large subunit from Lactobacillus plantarum

24% id,
27% cov

RR42_RS18065: D-alanine--D-alanine ligase
is similar to:
PaperBLAST

CARB_BACSU / P25994: Carbamoyl-phosphate synthase pyrimidine-specific large chain; Carbamoyl-phosphate synthetase ammonia chain; EC 6.3.5.5 from Bacillus subtilis

22% id,
25% cov

RR42_RS32735: 3-methylcrotonyl-CoA carboxylase
is similar to:
PaperBLAST

carB / CAB56843.1: carbamoyl-phosphate synthase large subunit from Lactobacillus plantarum

26% id,
17% cov

RR42_RS04410: cyanophycin synthetase
is similar to:
PaperBLAST

CARB_BACSU / P25994: Carbamoyl-phosphate synthase pyrimidine-specific large chain; Carbamoyl-phosphate synthetase ammonia chain; EC 6.3.5.5 from Bacillus subtilis

28% id,
15% cov

CARB_ARATH / Q42601: Carbamoyl-phosphate synthase large chain, chloroplastic; Carbamoyl-phosphate synthetase ammonia chain; Protein VENOSA 3; EC 6.3.5.5 from Arabidopsis thaliana

25% id,
10% cov

RR42_RS17700: acetyl-CoA carboxylase
is similar to:
PaperBLAST

CARB_ARATH / Q42601: Carbamoyl-phosphate synthase large chain, chloroplastic; Carbamoyl-phosphate synthetase ammonia chain; Protein VENOSA 3; EC 6.3.5.5 from Arabidopsis thaliana

21% id,
18% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory