Curated BLAST for Genomes

 

Curated BLAST

Searching in Cupriavidus basilensis FW507-4G11 (Cup4G11)

Found 1 curated entries in PaperBLAST's database that match 'cytochrome%deoxyribose dehydrogenase' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Cupriavidus basilensis FW507-4G11, or try another query

RR42_RS10775: alcohol dehydrogenase
is similar to:
PaperBLAST

PS417_10880: cytochrome c component of deoxyribose dehydrogenase from Pseudomonas simiae

43% id,
97% cov

RR42_RS21615: alcohol dehydrogenase
is similar to:
PaperBLAST

PS417_10880: cytochrome c component of deoxyribose dehydrogenase from Pseudomonas simiae

35% id,
96% cov

RR42_RS36765: cbb3-type cytochrome C oxidase subunit III
is similar to:
PaperBLAST

PS417_10880: cytochrome c component of deoxyribose dehydrogenase from Pseudomonas simiae

30% id,
41% cov

RR42_RS09210: cbb3-type cytochrome C oxidase subunit III
is similar to:
PaperBLAST

PS417_10880: cytochrome c component of deoxyribose dehydrogenase from Pseudomonas simiae

38% id,
30% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory