Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 64 curated entries in PaperBLAST's database that match '1.1.1.27' as complete word(s).

These curated entries have 50 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_2876: malate dehydrogenase, NAD-dependent (RefSeq)
is similar to:
PaperBLAST

Q9GT92: L-lactate dehydrogenase (EC 1.1.1.27) from Cryptosporidium parvum

51% id,
97% cov

CH_024078: L-lactate dehydrogenase; EC 1.1.1.27 from Babesia bovis
Q7Z0X7: L-lactate dehydrogenase (EC 1.1.1.27) from Babesia bovis

51% id,
96% cov

Q8I8U5: L-lactate dehydrogenase (EC 1.1.1.27) from Eimeria acervulina

50% id,
98% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3029904-3030920 (frame +3) on 57145
is similar to:
PaperBLAST

CH_024078: L-lactate dehydrogenase; EC 1.1.1.27 from Babesia bovis
Q7Z0X7: L-lactate dehydrogenase (EC 1.1.1.27) from Babesia bovis
Also see hits to annotated proteins above

51% id,
98% cov

Q27797: L-lactate dehydrogenase (EC 1.1.1.27) from Toxoplasma gondii
Also see hits to annotated proteins above

49% id,
99% cov

P90613: L-lactate dehydrogenase (EC 1.1.1.27) from Toxoplasma gondii
Also see hits to annotated proteins above

45% id,
99% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory