Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 76 curated entries in PaperBLAST's database that match '1.1.1.27' as complete word(s).

These curated entries have 63 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_2876: malate dehydrogenase, NAD-dependent (RefSeq) is similar to:	PaperBLAST
Q9GT92: L-lactate dehydrogenase (EC 1.1.1.27) from Cryptosporidium parvum	51% id, 97% cov
CH_024078: L-lactate dehydrogenase; EC 1.1.1.27 from Babesia bovis Q7Z0X7: L-lactate dehydrogenase (EC 1.1.1.27) from Babesia bovis	51% id, 96% cov
Q8I8U5: L-lactate dehydrogenase (EC 1.1.1.27) from Eimeria acervulina	50% id, 98% cov
Q27797: L-lactate dehydrogenase (EC 1.1.1.27) from Toxoplasma gondii	49% id, 98% cov
Q8I8U4: L-lactate dehydrogenase (EC 1.1.1.27) from Eimeria tenella	48% id, 97% cov
P90613: L-lactate dehydrogenase (EC 1.1.1.27) from Toxoplasma gondii	45% id, 97% cov
Q8I8U3: L-lactate dehydrogenase (EC 1.1.1.27) from Eimeria maxima	45% id, 97% cov
LDH: lactate dehydrogenase; EC 1.1.1.27 from Plasmodium falciparum LDH / GB\|ABA46354.1: lactate dehydrogenase; EC 1.1.1.27 from Plasmodium falciparum	44% id, 98% cov
LDH_PLABA / Q7SI97: L-lactate dehydrogenase; EC 1.1.1.27 from Plasmodium berghei	43% id, 96% cov
LDH1_STAAC / Q5HJD7: L-lactate dehydrogenase 1; L-LDH 1; EC 1.1.1.27 from Staphylococcus aureus LDH1_STAAE / A6QDL6: L-lactate dehydrogenase 1; L-LDH 1; EC 1.1.1.27 from Staphylococcus aureus	34% id, 96% cov
W8CXQ9: L-lactate dehydrogenase (EC 1.1.1.27) from Weizmannia coagulans	33% id, 97% cov
A0A1A6GB48: L-lactate dehydrogenase (EC 1.1.1.27) from Enterococcus mundtii	34% id, 96% cov
B9MKZ8: L-lactate dehydrogenase (EC 1.1.1.27) from Caldicellulosiruptor bescii	32% id, 100% cov
LDH_BACSU / P13714: L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Bacillus subtilis	34% id, 95% cov
LDH_LACHE / O32765: L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Lactobacillus helveticus	33% id, 96% cov
LDH_THEMA / P16115: L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Thermotoga maritima	33% id, 95% cov
LDH_GEOSE / P00344: L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Geobacillus stearothermophilus	33% id, 96% cov
P59390: L-lactate dehydrogenase (EC 1.1.1.27) from Lactiplantibacillus plantarum	33% id, 94% cov
LDH_THET8 / Q5SJA1: L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Thermus thermophilus	32% id, 97% cov
LDH_THECA / P06150: L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Thermus caldophilus	32% id, 97% cov
LDH_PEDAC / Q59645: L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Pediococcus acidilactici	33% id, 93% cov
LDH_THEAQ / P13715: L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Thermus aquaticus	31% id, 99% cov
LDH_DEIRA / P50933: L-lactate dehydrogenase; L-LDH; 2-ketoacid:NAD-dependent dehydrogenase; EC 1.1.1.27 from Deinococcus radiodurans	31% id, 98% cov
LDH_LACCA / P00343: L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Lacticaseibacillus casei ldh / P00343: L-lactate dehydrogenase subunit (EC 1.1.1.27) from Lactobacillus casei	33% id, 93% cov
Q5FMB0: L-lactate dehydrogenase (EC 1.1.1.27) from Lactobacillus acidophilus	32% id, 94% cov
A0A2U9AUU1: L-lactate dehydrogenase (EC 1.1.1.27) from Lacticaseibacillus casei	33% id, 92% cov
LDH_LACPE / P56511: L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Lactiplantibacillus pentosus ldh: L-lactate dehydrogenase; EC 1.1.1.27 from Lactobacillus pentosus	32% id, 95% cov
LDH2_STAAC / Q5HCV0: L-lactate dehydrogenase 2; L-LDH 2; EC 1.1.1.27 from Staphylococcus aureus LDH2_STAAE / A6QK89: L-lactate dehydrogenase 2; L-LDH 2; EC 1.1.1.27 from Staphylococcus aureus	31% id, 97% cov
ldh1: L-lactate dehydrogenase 1; EC 1.1.1.27 from Lactobacillus plantarum	32% id, 95% cov
B1A4R6: L-lactate dehydrogenase (EC 1.1.1.27) from Thermoanaerobacter ethanolicus	30% id, 98% cov
E7CXT1: L-lactate dehydrogenase (EC 1.1.1.27) from Thermoanaerobacterium saccharolyticum	30% id, 98% cov
ldh / P26283: L-lactate dehydrogenase subunit (EC 1.1.1.27) from Streptococcus mutans P26283: L-lactate dehydrogenase (EC 1.1.1.27) from Streptococcus mutans	32% id, 93% cov
LDH_SELRU / Q9EVR0: L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Selenomonas ruminantium	30% id, 99% cov
ldhA: L-lactate dehydrogenase 1; EC 1.1.1.27 from Lactococcus lactis	31% id, 94% cov
P00345: L-lactate dehydrogenase (EC 1.1.1.27) from Priestia megaterium	31% id, 94% cov
Q8CMZ0: L-lactate dehydrogenase (EC 1.1.1.27) from Staphylococcus epidermidis	30% id, 98% cov
LDH_STRP2 / Q04K99: L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Streptococcus pneumoniae LDH_STRPN / P0A3M9: L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Streptococcus pneumoniae	30% id, 95% cov
ldh / P78007: L-lactate dehydrogenase (EC 1.1.1.27) from Mycoplasma pneumoniae	29% id, 100% cov
LDHB_PIG / P00336: L-lactate dehydrogenase B chain; LDH-B; LDH heart subunit; LDH-H; EC 1.1.1.27 from Sus scrofa P00336: L-lactate dehydrogenase (EC 1.1.1.27) from Sus scrofa	30% id, 93% cov
Q5E9B1: L-lactate dehydrogenase (EC 1.1.1.27) from Bos taurus	30% id, 93% cov
LDHB_HUMAN / P07195: L-lactate dehydrogenase B chain; LDH-B; LDH heart subunit; LDH-H; Renal carcinoma antigen NY-REN-46; EC 1.1.1.27 from Homo sapiens	30% id, 93% cov
Q0GND8: L-lactate dehydrogenase (EC 1.1.1.27) from Iguana iguana	29% id, 93% cov
Q0GND9: L-lactate dehydrogenase (EC 1.1.1.27) from Amblyrhynchus cristatus	29% id, 93% cov
LDH6A_HUMAN / Q6ZMR3: L-lactate dehydrogenase A-like 6A; LDHA-like protein 6A; EC 1.1.1.27 from Homo sapiens	29% id, 93% cov
LDHA_MOUSE / P06151: L-lactate dehydrogenase A chain; LDH-A; LDH muscle subunit; LDH-M; EC 1.1.1.27 from Mus musculus	29% id, 92% cov
LDHA_PIG / P00339: L-lactate dehydrogenase A chain; LDH-A; LDH muscle subunit; LDH-M; EC 1.1.1.27 from Sus scrofa P00339: L-lactate dehydrogenase (EC 1.1.1.27) from Sus scrofa	29% id, 92% cov
P07864: L-lactate dehydrogenase (EC 1.1.1.27) from Homo sapiens	29% id, 92% cov
LDH_LACLN / D8KFT1: L-lactate dehydrogenase; L-LDH; EC 1.1.1.27 from Lactococcus lactis	28% id, 98% cov
B7XH73: L-lactate dehydrogenase (EC 1.1.1.27) from Equus caballus	29% id, 92% cov
Ldha / P04642: lactate dehydrogenase subunit (EC 1.1.1.27) from Rattus norvegicus	29% id, 92% cov
LDHA_RABIT / P13491: L-lactate dehydrogenase A chain; LDH-A; LDH muscle subunit; LDH-M; EC 1.1.1.27 from Oryctolagus cuniculus P13491: L-lactate dehydrogenase (EC 1.1.1.27) from Oryctolagus cuniculus	28% id, 92% cov
LDHA_HUMAN / P00338: L-lactate dehydrogenase A chain; LDH-A; Cell proliferation-inducing gene 19 protein; LDH muscle subunit; LDH-M; Renal carcinoma antigen NY-REN-59; EC 1.1.1.27 from Homo sapiens P00338: L-lactate dehydrogenase (EC 1.1.1.27) from Homo sapiens	28% id, 92% cov
More...

Dshi_2894: protein of unknown function DUF224 cysteine-rich region domain protein (RefSeq) is similar to:	PaperBLAST
lutA / O07020: iron-sulfur oxidase subunit used in L-lactate utilization (EC 1.1.1.27) from Bacillus subtilis	26% id, 99% cov
Q5F885: L-lactate dehydrogenase (subunit 3/3) (EC 1.1.1.27) from Neisseria gonorrhoeae	26% id, 76% cov

Dshi_0948: L-lactate dehydrogenase (cytochrome) (RefSeq) is similar to:	PaperBLAST
Q44467: L-lactate dehydrogenase (EC 1.1.1.27); L-lactate oxidase (EC 1.1.3.2) from Aerococcus viridans	27% id, 61% cov

Dshi_2484: FMN-dependent alpha-hydroxy acid dehydrogenase (RefSeq) is similar to:	PaperBLAST
Q44467: L-lactate dehydrogenase (EC 1.1.1.27); L-lactate oxidase (EC 1.1.3.2) from Aerococcus viridans	38% id, 38% cov

Dshi_1868: ferredoxin-dependent glutamate synthase (RefSeq) is similar to:	PaperBLAST
Q44467: L-lactate dehydrogenase (EC 1.1.1.27); L-lactate oxidase (EC 1.1.3.2) from Aerococcus viridans	29% id, 32% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3029904-3030920 (frame +3) on 57145 is similar to:	PaperBLAST
CH_024078: L-lactate dehydrogenase; EC 1.1.1.27 from Babesia bovis Q7Z0X7: L-lactate dehydrogenase (EC 1.1.1.27) from Babesia bovis Also see hits to annotated proteins above	51% id, 98% cov
Q27797: L-lactate dehydrogenase (EC 1.1.1.27) from Toxoplasma gondii Also see hits to annotated proteins above	49% id, 99% cov
P90613: L-lactate dehydrogenase (EC 1.1.1.27) from Toxoplasma gondii Also see hits to annotated proteins above	45% id, 99% cov
LDH2_BIFL2 / E8ME30: L-lactate dehydrogenase 2; L-LDH 2; FBP-dependent LDH; EC 1.1.1.27 from Bifidobacterium longum ldh2 / E8ME30: L-lactate dehydrogenase subunit (EC 1.1.1.27) from Bifidobacterium longum	32% id, 97% cov
LDHB_PIG / P00336: L-lactate dehydrogenase B chain; LDH-B; LDH heart subunit; LDH-H; EC 1.1.1.27 from Sus scrofa P00336: L-lactate dehydrogenase (EC 1.1.1.27) from Sus scrofa Also see hits to annotated proteins above	30% id, 96% cov
LDH6A_HUMAN / Q6ZMR3: L-lactate dehydrogenase A-like 6A; LDHA-like protein 6A; EC 1.1.1.27 from Homo sapiens Also see hits to annotated proteins above	29% id, 96% cov
Q5E9B1: L-lactate dehydrogenase (EC 1.1.1.27) from Bos taurus Also see hits to annotated proteins above	29% id, 96% cov
LDHB_HUMAN / P07195: L-lactate dehydrogenase B chain; LDH-B; LDH heart subunit; LDH-H; Renal carcinoma antigen NY-REN-46; EC 1.1.1.27 from Homo sapiens Also see hits to annotated proteins above	29% id, 96% cov
B7XH73: L-lactate dehydrogenase (EC 1.1.1.27) from Equus caballus Also see hits to annotated proteins above	28% id, 95% cov
Ldha / P04642: lactate dehydrogenase subunit (EC 1.1.1.27) from Rattus norvegicus Also see hits to annotated proteins above	28% id, 95% cov
LDHA_RABIT / P13491: L-lactate dehydrogenase A chain; LDH-A; LDH muscle subunit; LDH-M; EC 1.1.1.27 from Oryctolagus cuniculus P13491: L-lactate dehydrogenase (EC 1.1.1.27) from Oryctolagus cuniculus Also see hits to annotated proteins above	28% id, 95% cov
More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory