Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 10 curated entries in PaperBLAST's database that match '1.1.1.46'.

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 33 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_1243: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

HSERO_RS05210: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Herbaspirillum seropedicae

47% id,
99% cov

BPHYT_RS16920: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Burkholderia phytofirmans

46% id,
99% cov

Shewana3_2071: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Shewanella sp.

46% id,
98% cov

More...

Dshi_2891: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

35% id,
92% cov

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

35% id,
92% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

35% id,
92% cov

More...

Dshi_1429: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

Shewana3_2071: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Shewanella sp.

33% id,
99% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

32% id,
95% cov

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

31% id,
95% cov

More...

Dshi_0553: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

34% id,
92% cov

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

33% id,
92% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

33% id,
92% cov

More...

Dshi_2182: 3-oxoacyl-(acyl-carrier-protein) reductase (RefSeq)
is similar to:
PaperBLAST

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

34% id,
92% cov

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

33% id,
92% cov

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

32% id,
92% cov

More...

Dshi_1358: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

34% id,
92% cov

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

34% id,
92% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

33% id,
92% cov

More...

Dshi_3067: acetoacetyl-CoA reductase (RefSeq)
is similar to:
PaperBLAST

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

34% id,
90% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

33% id,
90% cov

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

32% id,
90% cov

More...

Dshi_1258: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

33% id,
91% cov

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

34% id,
90% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

33% id,
91% cov

More...

Dshi_3903: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

33% id,
91% cov

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

33% id,
91% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

32% id,
91% cov

More...

Dshi_3712: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

BPHYT_RS16920: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Burkholderia phytofirmans

32% id,
92% cov

Ac3H11_614: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Acidovorax sp.

33% id,
89% cov

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

31% id,
93% cov

More...

Dshi_1222: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

32% id,
90% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

31% id,
90% cov

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

31% id,
90% cov

More...

Dshi_1544: 3-hydroxybutyrate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

31% id,
92% cov

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

31% id,
92% cov

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

31% id,
92% cov

More...

Dshi_3899: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

30% id,
96% cov

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

30% id,
96% cov

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

29% id,
96% cov

More...

Dshi_4158: acetoin reductase (RefSeq)
is similar to:
PaperBLAST

BPHYT_RS16920: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Burkholderia phytofirmans

31% id,
90% cov

HSERO_RS05210: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Herbaspirillum seropedicae

30% id,
93% cov

Dshi_2239: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

29% id,
96% cov

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

28% id,
94% cov

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

28% id,
94% cov

More...

Dshi_2436: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase (RefSeq)
is similar to:
PaperBLAST

Shewana3_2071: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Shewanella sp.

29% id,
96% cov

BPHYT_RS16920: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Burkholderia phytofirmans

26% id,
95% cov

Dshi_0620: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

BPHYT_RS16920: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Burkholderia phytofirmans

30% id,
92% cov

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

29% id,
91% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

29% id,
91% cov

More...

Dshi_1700: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

BPHYT_RS16920: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Burkholderia phytofirmans

30% id,
91% cov

Shewana3_2071: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Shewanella sp.

26% id,
72% cov

Dshi_1008: enoyl-(acyl-carrier-protein) reductase (RefSeq)
is similar to:
PaperBLAST

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

28% id,
92% cov

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

28% id,
92% cov

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

28% id,
92% cov

More...

Dshi_0325: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

28% id,
92% cov

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

28% id,
92% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

27% id,
92% cov

More...

Dshi_0554: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

Shewana3_2071: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Shewanella sp.

27% id,
95% cov

BPHYT_RS16920: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Burkholderia phytofirmans

27% id,
91% cov

Ac3H11_614: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Acidovorax sp.

27% id,
82% cov

Dshi_2035: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

28% id,
91% cov

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

28% id,
91% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

28% id,
91% cov

Dshi_2480: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

Shewana3_2071: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Shewanella sp.

26% id,
97% cov

BPHYT_RS16920: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Burkholderia phytofirmans

26% id,
98% cov

Dshi_0643: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

Shewana3_2071: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Shewanella sp.

26% id,
93% cov

BPHYT_RS16920: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Burkholderia phytofirmans

26% id,
90% cov

Dshi_0672: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

26% id,
92% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

26% id,
92% cov

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

25% id,
92% cov

More...

Dshi_0066: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

34% id,
71% cov

Shewana3_2071: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Shewanella sp.

31% id,
75% cov

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

33% id,
71% cov

More...

Dshi_1049: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

BPHYT_RS16920: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Burkholderia phytofirmans

26% id,
92% cov

Dshi_2849: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

Shewana3_2071: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Shewanella sp.

34% id,
65% cov

Dshi_1954: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

Shewana3_2071: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Shewanella sp.

23% id,
95% cov

Dshi_0220: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

BPHYT_RS16920: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Burkholderia phytofirmans

27% id,
74% cov

Dshi_1963: Beta-ketoacyl synthase (RefSeq)
is similar to:
PaperBLAST

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

27% id,
72% cov

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

26% id,
71% cov

Dshi_2135: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

24% id,
77% cov

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

24% id,
77% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

23% id,
77% cov

More...

Dshi_1270: oxidoreductase domain protein (RefSeq)
is similar to:
PaperBLAST

SMc00588: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Sinorhizobium meliloti

28% id,
54% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 32 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2632294-2633262 (frame +1) on 57145
is similar to:
PaperBLAST

Ac3H11_614: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Acidovorax sp.
Also see hits to annotated proteins above

27% id,
99% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory