Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 4 curated entries in PaperBLAST's database that match '1.1.1.59' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_0804: glucose-methanol-choline oxidoreductase (RefSeq)
is similar to:
PaperBLAST

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.

45% id,
94% cov

Dshi_1752: 3-hydroxyisobutyrate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

HPD1 / A0A1D8PQ07: 3-hydroxypropanonate dehydrogenase (EC 1.1.1.59) from Candida albicans
A0A1D8PQ07: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Candida albicans

30% id,
71% cov

Dshi_1428: glucose-methanol-choline oxidoreductase (RefSeq)
is similar to:
PaperBLAST

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.

32% id,
63% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory