Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 35 curated entries in PaperBLAST's database that match '1.1.1.9' as complete word(s).

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 24 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_0551: Alcohol dehydrogenase GroES domain protein (RefSeq)
is similar to:		 PaperBLAST

Dshi_0551: D-xylulose reductase (EC 1.1.1.9) from Dinoroseobacter shibae

 100% id,
100% cov

Q2K0Q7: D-xylulose reductase (EC 1.1.1.9) from Rhizobium etli

 67% id,
99% cov

HSERO_RS17015: sorbitol dehydrogenase (EC 1.1.1.14); xylitol dehydrogenase (EC 1.1.1.9) from Herbaspirillum seropedicae

 61% id,
99% cov

More...

Dshi_0620: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:		 PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

 34% id,
98% cov

Dshi_1258: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:		 PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

 34% id,
97% cov

Dshi_3712: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:		 PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

 33% id,
99% cov

Dshi_4159: Alcohol dehydrogenase GroES domain protein (RefSeq)
is similar to:		 PaperBLAST

DHSO_BACSU / Q06004: Sorbitol dehydrogenase; SDH; Glucitol dehydrogenase; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Bacillus subtilis
gutB / Q06004: glucitol dehydrogenase monomer (EC 1.1.1.9; EC 1.1.1.14) from Bacillus subtilis

 34% id,
97% cov

PS417_17720: xylitol 2-dehydrogenase (EC 1.1.1.9) from Pseudomonas simiae

 33% id,
97% cov

S6BFC0: D-xylulose reductase (EC 1.1.1.9) from Rhizomucor pusillus

 33% id,
94% cov

More...

Dshi_1358: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:		 PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

 32% id,
98% cov

Dshi_0931: Alcohol dehydrogenase GroES domain protein (RefSeq)
is similar to:		 PaperBLAST

DHSO_BACSU / Q06004: Sorbitol dehydrogenase; SDH; Glucitol dehydrogenase; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Bacillus subtilis
gutB / Q06004: glucitol dehydrogenase monomer (EC 1.1.1.9; EC 1.1.1.14) from Bacillus subtilis

 32% id,
97% cov

BPHYT_RS16050: xylitol 2-dehydrogenase (EC 1.1.1.9) from Burkholderia phytofirmans

 29% id,
95% cov

xdh1 / Q876R2: D-sorbitol dehydrogenase (EC 1.1.1.14; EC 1.1.1.9) from Hypocrea jecorina

 32% id,
85% cov

More...

Dshi_1222: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:		 PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

 32% id,
96% cov

Dshi_0553: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:		 PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

 31% id,
97% cov

Dshi_2891: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:		 PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

 30% id,
99% cov

Dshi_1078: Alcohol dehydrogenase zinc-binding domain protein (RefSeq)
is similar to:		 PaperBLAST

BPHYT_RS16050: xylitol 2-dehydrogenase (EC 1.1.1.9) from Burkholderia phytofirmans

 31% id,
93% cov

S6BFC0: D-xylulose reductase (EC 1.1.1.9) from Rhizomucor pusillus

 26% id,
88% cov

Dshi_3899: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:		 PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

 29% id,
99% cov

Dshi_1429: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:		 PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

 29% id,
100% cov

Dshi_0325: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:		 PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

 28% id,
100% cov

Dshi_2036: Alcohol dehydrogenase GroES domain protein (RefSeq)
is similar to:		 PaperBLAST

DHSO_BACSU / Q06004: Sorbitol dehydrogenase; SDH; Glucitol dehydrogenase; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Bacillus subtilis
gutB / Q06004: glucitol dehydrogenase monomer (EC 1.1.1.9; EC 1.1.1.14) from Bacillus subtilis

 33% id,
83% cov

XYL2_ASPOR / Q86ZV0: D-xylulose reductase A; Xylitol dehydrogenase A; EC 1.1.1.9 from Aspergillus oryzae
GI|83774265: xylitol dehydrogenase; EC 1.1.1.9 from Aspergillus oryzae
xdhA / Q86ZV0: NAD+-dependent xylitol dehydrogenase (EC 1.1.1.9) from Aspergillus oryzae
Q86ZV0: D-xylulose reductase (EC 1.1.1.9) from Aspergillus oryzae

 28% id,
94% cov

DHSO_RAT / P27867: Sorbitol dehydrogenase; SDH; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Rattus norvegicus

 30% id,
81% cov

More...

Dshi_0103: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase (RefSeq)
is similar to:		 PaperBLAST

A0A1B4XTS0: L-arabinitol 4-dehydrogenase (EC 1.1.1.12); D-xylulose reductase (EC 1.1.1.9) from Meyerozyma caribbica

 27% id,
98% cov

G3AIP8: D-xylulose reductase (EC 1.1.1.9) from Spathaspora passalidarum

 28% id,
93% cov

A0A3S7PMC4: D-xylulose reductase (EC 1.1.1.9) from Torulaspora delbrueckii

 28% id,
91% cov

More...

Dshi_1243: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:		 PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

 27% id,
98% cov

Dshi_0473: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase (RefSeq)
is similar to:		 PaperBLAST

G3AIP8: D-xylulose reductase (EC 1.1.1.9) from Spathaspora passalidarum

 28% id,
96% cov

S6BFC0: D-xylulose reductase (EC 1.1.1.9) from Rhizomucor pusillus

 28% id,
93% cov

G3AIB3: D-xylulose reductase (EC 1.1.1.9) from Spathaspora passalidarum

 27% id,
91% cov

More...

Dshi_3516: chlorophyll synthesis pathway, BchC (RefSeq)
is similar to:		 PaperBLAST

Dshi_0551: D-xylulose reductase (EC 1.1.1.9) from Dinoroseobacter shibae

 26% id,
100% cov

Dshi_3903: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:		 PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

 25% id,
100% cov

Dshi_2849: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:		 PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

 35% id,
68% cov

Dshi_1008: enoyl-(acyl-carrier-protein) reductase (RefSeq)
is similar to:		 PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

 23% id,
100% cov

Dshi_2853: crotonyl-CoA reductase (RefSeq)
is similar to:		 PaperBLAST

DHSO1_YEAST / P35497: Sorbitol dehydrogenase 1; SDH 1; Polyol dehydrogenase; Xylitol dehydrogenase; EC 1.1.1.-; EC 1.1.1.9 from Saccharomyces cerevisiae

 24% id,
92% cov

A0A1B4XTS0: L-arabinitol 4-dehydrogenase (EC 1.1.1.12); D-xylulose reductase (EC 1.1.1.9) from Meyerozyma caribbica

 27% id,
67% cov

A0A3S7PMB5: D-xylulose reductase (EC 1.1.1.9) from Pichia kudriavzevii

 20% id,
79% cov

Dshi_0220: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:		 PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

 32% id,
68% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 24 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory