Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 10 curated entries in PaperBLAST's database that match '1.1.5.2' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_2294: Pyrrolo-quinoline quinone (RefSeq)
is similar to:
PaperBLAST

DHG_ECOLI / P15877: Quinoprotein glucose dehydrogenase; Glucose dehydrogenase [pyrroloquinoline-quinone]; EC 1.1.5.2 from Escherichia coli
Gcd / b0124: quinoprotein glucose dehydrogenase (EC 1.1.5.2) from Escherichia coli
gcd / GB|BAB96699.1: quinoprotein glucose dehydrogenase; EC 1.1.5.2 from Escherichia coli
gcd / P15877: quinoprotein glucose dehydrogenase (EC 1.1.5.2) from Escherichia coli

39% id,
98% cov

D4P700: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pantoea ananatis

38% id,
98% cov

A0A0J6JEN3: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pseudomonas taetrolens

37% id,
98% cov

Dshi_1523: glucose sorbosone dehydrogenase (RefSeq)
is similar to:
PaperBLAST

Q8ZUN8: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pyrobaculum aerophilum

32% id,
94% cov

I7A144: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Thermus thermophilus

33% id,
92% cov

DHGB_ACICA / P13650: Quinoprotein glucose dehydrogenase B; Glucose dehydrogenase B [pyrroloquinoline-quinone]; Soluble glucose dehydrogenase; s-GDH; EC 1.1.5.2 from Acinetobacter calcoaceticus
P13650: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2); soluble quinoprotein glucose dehydrogenase (EC 1.1.99.35) from Acinetobacter calcoaceticus

28% id,
70% cov

Dshi_1872: hypothetical protein (RefSeq)
is similar to:
PaperBLAST

I7A144: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Thermus thermophilus

36% id,
68% cov

Q8ZUN8: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pyrobaculum aerophilum

33% id,
70% cov

Dshi_0476: Pyrrolo-quinoline quinone (RefSeq)
is similar to:
PaperBLAST

A0A0J6JEN3: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pseudomonas taetrolens

34% id,
20% cov

D4P700: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pantoea ananatis

32% id,
17% cov

A0A0J6JEN3: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pseudomonas taetrolens

29% id,
19% cov

More...

Dshi_2673: Pyrrolo-quinoline quinone (RefSeq)
is similar to:
PaperBLAST

DHG_ECOLI / P15877: Quinoprotein glucose dehydrogenase; Glucose dehydrogenase [pyrroloquinoline-quinone]; EC 1.1.5.2 from Escherichia coli
Gcd / b0124: quinoprotein glucose dehydrogenase (EC 1.1.5.2) from Escherichia coli
gcd / GB|BAB96699.1: quinoprotein glucose dehydrogenase; EC 1.1.5.2 from Escherichia coli
gcd / P15877: quinoprotein glucose dehydrogenase (EC 1.1.5.2) from Escherichia coli

24% id,
20% cov

D4P700: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pantoea ananatis

29% id,
13% cov

A0A0J6JEN3: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pseudomonas taetrolens

35% id,
9% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory