Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 15 curated entries in PaperBLAST's database that match '1.1.99.39' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_2076: FAD linked oxidase domain protein (RefSeq)
is similar to:
PaperBLAST

D2HDH_XANCL / P0DV35: D-2-hydroxyglutarate dehydrogenase; D2HGDH; EC 1.1.99.39 from Xanthomonas citri

39% id,
89% cov

D2HDH_STUS1 / A4VGK4: D-2-hydroxyglutarate dehydrogenase; D-2-HG dehydrogenase; D2HGDH; D-malate dehydrogenase; EC 1.1.99.39; EC 1.1.99.- from Stutzerimonas stutzeri

35% id,
94% cov

Q9I6H4: D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) from Pseudomonas aeruginosa

33% id,
94% cov

More...

Dshi_1361: D-lactate dehydrogenase (cytochrome) (RefSeq)
is similar to:
PaperBLAST

D2HDH_XANCL / P0DV35: D-2-hydroxyglutarate dehydrogenase; D2HGDH; EC 1.1.99.39 from Xanthomonas citri

31% id,
96% cov

Q9I6H4: D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) from Pseudomonas aeruginosa

28% id,
96% cov

D2HDH_STUS1 / A4VGK4: D-2-hydroxyglutarate dehydrogenase; D-2-HG dehydrogenase; D2HGDH; D-malate dehydrogenase; EC 1.1.99.39; EC 1.1.99.- from Stutzerimonas stutzeri

28% id,
91% cov

More...

Dshi_2896: FAD linked oxidase domain protein (RefSeq)
is similar to:
PaperBLAST

D2HDH_XANCL / P0DV35: D-2-hydroxyglutarate dehydrogenase; D2HGDH; EC 1.1.99.39 from Xanthomonas citri

29% id,
97% cov

D2HDH_STUS1 / A4VGK4: D-2-hydroxyglutarate dehydrogenase; D-2-HG dehydrogenase; D2HGDH; D-malate dehydrogenase; EC 1.1.99.39; EC 1.1.99.- from Stutzerimonas stutzeri

27% id,
98% cov

Q9I6H4: D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) from Pseudomonas aeruginosa

25% id,
99% cov

More...

Dshi_3324: FAD linked oxidase domain protein (RefSeq)
is similar to:
PaperBLAST

D2HDH_STUS1 / A4VGK4: D-2-hydroxyglutarate dehydrogenase; D-2-HG dehydrogenase; D2HGDH; D-malate dehydrogenase; EC 1.1.99.39; EC 1.1.99.- from Stutzerimonas stutzeri

25% id,
99% cov

D2HDH_PSEPK / Q88EH0: D-2-hydroxyglutarate dehydrogenase; D2HGDH; EC 1.1.99.39 from Pseudomonas putida
ydiJ / Q88EH0: (R)-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) from Pseudomonas putida
PP_4493: D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) from Pseudomonas putida

32% id,
61% cov

D2HDH_ECOLI / P77748: D-2-hydroxyglutarate dehydrogenase; D2HGDH; EC 1.1.99.39 from Escherichia coli
ydiJ / P77748: D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) from Escherichia coli

32% id,
58% cov

More...

Dshi_2895: FAD linked oxidase domain protein (RefSeq)
is similar to:
PaperBLAST

D2HDH_XANCL / P0DV35: D-2-hydroxyglutarate dehydrogenase; D2HGDH; EC 1.1.99.39 from Xanthomonas citri

34% id,
42% cov

D2HDH_STUS1 / A4VGK4: D-2-hydroxyglutarate dehydrogenase; D-2-HG dehydrogenase; D2HGDH; D-malate dehydrogenase; EC 1.1.99.39; EC 1.1.99.- from Stutzerimonas stutzeri

30% id,
42% cov

D2HDH_ARATH / O23240: D-2-hydroxyglutarate dehydrogenase, mitochondrial; AtD-2HGDH; EC 1.1.99.39 from Arabidopsis thaliana

30% id,
31% cov

More...

Dshi_2229: transcriptional regulator, LysR family (RefSeq)
is similar to:
PaperBLAST

D2HDH_PANAA / A0A0H3KZS3: D-2-hydroxyglutarate dehydrogenase; D2HGDH; EC 1.1.99.39 from Pantoea ananatis

27% id,
8% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory