Searching in Dinoroseobacter shibae DFL-12 (Dino)
Found 22 curated entries in PaperBLAST's database that match '1.13.11.1' as complete word(s).
These curated entries have 18 distinct sequences.
Running ublast with E ≤ 0.01
Found 2 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query
| Dshi_0961: Catechol dioxygenase domain protein (RefSeq) is similar to: | PaperBLAST |
HQDA_ASPNC / A2QAP8: Intradiol ring-cleavage dioxygenase hqdA; EC 1.13.11.1; EC 1.13.11.37 from Aspergillus niger | 35% id, 45% cov |
HQD2_CANAL / P86029: Catechol 1,2-dioxygenase; EC 1.13.11.1 from Candida albicans | 32% id, 48% cov |
| Dshi_3476: protocatechuate 3,4-dioxygenase, alpha subunit (RefSeq) is similar to: | PaperBLAST |
catA2: catechol 1,2-dioxygenase 2; EC 1.13.11.1 from Acinetobacter lwoffii | 24% id, 60% cov |
catA / A0F0B5: catechol-1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas reinekei | 28% id, 52% cov |
Q8G9L3: catechol 1,2-dioxygenase (EC 1.13.11.1) from Rhodococcus opacus | 31% id, 45% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 3660128-3661186 (frame -2) on 57145 is similar to: | PaperBLAST |
Q8G9L3: catechol 1,2-dioxygenase (EC 1.13.11.1) from Rhodococcus opacus | 29% id, 60% cov |
salD / Q0VH42: 4-methylcatechol 1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas reinekei | 26% id, 60% cov |
Q8GAZ6: catechol 1,2-dioxygenase (EC 1.13.11.1) from Burkholderia sp. | 36% id, 39% cov |
Lawrence Berkeley National Laboratory