Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 22 curated entries in PaperBLAST's database that match '1.17.1.8' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_3040: Dihydrodipicolinate reductase (RefSeq)
is similar to:
PaperBLAST

Q2YJN7: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Brucella abortus

60% id,
99% cov

Q6G2G3: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Bartonella henselae

49% id,
99% cov

DAPB_ECOLI / P04036: 4-hydroxy-tetrahydrodipicolinate reductase; HTPA reductase; EC 1.17.1.8 from Escherichia coli
DapB / b0031: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Escherichia coli
dapB / P04036: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Escherichia coli
P04036: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Escherichia coli

46% id,
96% cov

More...

Dshi_0149: dihydrodipicolinate synthase (RefSeq)
is similar to:
PaperBLAST

Q3M723: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Trichormus variabilis

35% id,
99% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory