Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 24 curated entries in PaperBLAST's database that match '1.2.1.11' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_3240: aspartate-semialdehyde dehydrogenase (RefSeq)
is similar to:
PaperBLAST

DHAS2_VIBCH / P23247: Aspartate-semialdehyde dehydrogenase 2; ASA dehydrogenase 2; ASADH 2; Aspartate-beta-semialdehyde dehydrogenase 2; EC 1.2.1.11 from Vibrio cholerae

50% id,
97% cov

asd / Q04797: aspartate semialdehyde dehydrogenase subunit (EC 1.2.1.11) from Bacillus subtilis

45% id,
97% cov

DHAS_MYCTU / P9WNX5: Aspartate-semialdehyde dehydrogenase; ASA dehydrogenase; ASADH; Aspartate-beta-semialdehyde dehydrogenase; EC 1.2.1.11 from Mycobacterium tuberculosis
P9WNX5: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) from Mycobacterium tuberculosis

43% id,
99% cov

More...

Dshi_1759: N-acetyl-gamma-glutamyl-phosphate reductase (RefSeq)
is similar to:
PaperBLAST

DHAS_METJA / Q57658: Aspartate-semialdehyde dehydrogenase; ASA dehydrogenase; ASADH; Aspartate-beta-semialdehyde dehydrogenase; EC 1.2.1.11 from Methanocaldococcus jannaschii
asd / Q57658: aspartate-semialdehyde dehydrogenase monomer (EC 1.2.1.11) from Methanocaldococcus jannaschii

24% id,
96% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1822382-1823440 (frame -2) on 57145
is similar to:
PaperBLAST

DHAS_METJA / Q57658: Aspartate-semialdehyde dehydrogenase; ASA dehydrogenase; ASADH; Aspartate-beta-semialdehyde dehydrogenase; EC 1.2.1.11 from Methanocaldococcus jannaschii
asd / Q57658: aspartate-semialdehyde dehydrogenase monomer (EC 1.2.1.11) from Methanocaldococcus jannaschii
Also see hits to annotated proteins above

25% id,
99% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory