Curated BLAST for Genomes


Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 11 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_2945: Prephenate dehydrogenase (RefSeq)
is similar to:

J9XQS6: prephenate dehydrogenase (EC from uncultured bacterium

59% id,
85% cov

TYRC_ZYMMO / Q04983: Cyclohexadienyl dehydrogenase; Arogenate dehydrogenase; ADH; Prephenate dehydrogenase; PDH; EC; EC from Zymomonas mobilis

42% id,
97% cov

O67636: prephenate dehydrogenase (EC from Aquifex aeolicus

34% id,
92% cov


Dshi_0653: Prephenate dehydratase (RefSeq)
is similar to:

O30012: prephenate dehydrogenase (EC; prephenate dehydratase (EC; chorismate mutase (EC from Archaeoglobus fulgidus

30% id,
42% cov

Dshi_0349: chorismate mutase (RefSeq)
is similar to:

P43902: prephenate dehydrogenase (EC from Haemophilus influenzae

29% id,
23% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory