Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 43 curated entries in PaperBLAST's database that match '1.3.3.6' as complete word(s).

These curated entries have 29 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_2357: acyl-CoA dehydrogenase domain protein (RefSeq)
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

34% id,
88% cov

Q33DR0: acyl-CoA oxidase (EC 1.3.3.6) from Paenarthrobacter ureafaciens

25% id,
51% cov

Q33DR1: acyl-CoA oxidase (EC 1.3.3.6) from Arthrobacter sp.

28% id,
25% cov

More...

Dshi_1297: acyl-CoA dehydrogenase domain protein (RefSeq)
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

30% id,
84% cov

Q33DR1: acyl-CoA oxidase (EC 1.3.3.6) from Arthrobacter sp.

25% id,
58% cov

Q33DR0: acyl-CoA oxidase (EC 1.3.3.6) from Paenarthrobacter ureafaciens

23% id,
59% cov

Dshi_0838: acyl-CoA dehydrogenase domain protein (RefSeq)
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

27% id,
84% cov

Q33DR0: acyl-CoA oxidase (EC 1.3.3.6) from Paenarthrobacter ureafaciens

27% id,
53% cov

J7K6M3: acyl-CoA oxidase (EC 1.3.3.6) from Prunus persica

24% id,
51% cov

More...

Dshi_0204: acyl-CoA dehydrogenase domain protein (RefSeq)
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

27% id,
85% cov

Dshi_1058: acyl-CoA dehydrogenase domain protein (RefSeq)
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

26% id,
76% cov

Dshi_1750: acyl-CoA dehydrogenase domain protein (RefSeq)
is similar to:
PaperBLAST

ACOX1_RAT / P07872: Peroxisomal acyl-coenzyme A oxidase 1; AOX; Palmitoyl-CoA oxidase; EC 1.3.3.6 from Rattus norvegicus
P07872: acyl-CoA oxidase (EC 1.3.3.6) from Rattus norvegicus

23% id,
54% cov

ACOX1_MOUSE / Q9R0H0: Peroxisomal acyl-coenzyme A oxidase 1; AOX; Palmitoyl-CoA oxidase; EC 1.3.3.6 from Mus musculus

22% id,
50% cov

Dshi_0839: acyl-CoA dehydrogenase domain protein (RefSeq)
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana

40% id,
16% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

848415-849704 (frame -1) on 57145
is similar to:
PaperBLAST

ACOX4_ARATH / Q96329: Acyl-coenzyme A oxidase 4, peroxisomal; AOX 4; G6p; Short-chain acyl-CoA oxidase; AtCX4; AtG6; SAOX; EC 1.3.3.6 from Arabidopsis thaliana
ACX4 / Q96329: 4-hydroxybutanoyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Q96329: acyl-CoA oxidase (EC 1.3.3.6) from Arabidopsis thaliana
Also see hits to annotated proteins above

27% id,
89% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory