Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 2 curated entries in PaperBLAST's database that match '1.4.3.10' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_0053: HI0933 family protein (RefSeq)
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

31% id,
26% cov

Dshi_0125: NADH:flavin oxidoreductase/NADH oxidase (RefSeq)
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

34% id,
23% cov

Dshi_2264: sarcosine oxidase, alpha subunit family (RefSeq)
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

49% id,
13% cov

Dshi_3888: L-amino-acid oxidase (RefSeq)
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

32% id,
18% cov

Dshi_1362: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq)
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

37% id,
12% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory