Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 77 curated entries in PaperBLAST's database that match '2.3.1.16' as complete word(s).

These curated entries have 59 distinct sequences.

Running ublast with E ≤ 0.01

Found 15 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_3066: acetyl-CoA acetyltransferase (RefSeq)
is similar to:
PaperBLAST

PGA1_c03400: acetyl-CoA:acetyl-CoA C-acetyltransferase / acetyl-CoA:propanoyl-CoA 2-C-acetyltransferase (EC 2.3.1.9; EC 2.3.1.16) from Phaeobacter inhibens

91% id,
100% cov

phaA / Q3IZW1: acetyl-CoA acetyltransferase (EC 2.3.1.16) from Rhodobacter sphaeroides

87% id,
100% cov

phbA / P14611: acetyl-CoA acetyltransferase subunit (EC 2.3.1.16) from Cupriavidus necator

66% id,
100% cov

More...

Dshi_3817: beta-ketoadipyl CoA thiolase (RefSeq)
is similar to:
PaperBLAST

pcaF / Q51956: subunit of β-ketoadipyl CoA thiolase (EC 2.3.1.174; EC 2.3.1.16) from Pseudomonas putida

68% id,
100% cov

PS417_10515 / A0A1N7U0F8: acetyl-CoA C-acetyltransferase (EC 2.3.1.16) from Pseudomonas simiae

46% id,
99% cov

Sama_0031: Acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Shewanella amazonensis

45% id,
99% cov

More...

Dshi_0074: acetyl-CoA acetyltransferase (RefSeq)
is similar to:
PaperBLAST

PfGW456L13_2982: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) from Pseudomonas fluorescens

63% id,
97% cov

AO353_25685: acetyl-CoA:acetyl-CoA C-acetyltransferase / acetyl-CoA:propanoyl-CoA 2-C-acetyltransferase (EC 2.3.1.9; EC 2.3.1.16) from Pseudomonas fluorescens

62% id,
97% cov

SO1677: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) from Shewanella oneidensis

61% id,
98% cov

More...

Dshi_3331: acetyl-CoA acetyltransferase (RefSeq)
is similar to:
PaperBLAST

BKTB_CUPNH / Q0KBP1: Beta-ketothiolase BktB; Acetyl-CoA acetyltransferase; Acetyl-CoA acyltransferase; EC 2.3.1.16; EC 2.3.1.9 from Cupriavidus necator
bktB / Q0KBP1: β-ketothiolase (EC 2.3.1.16; EC 2.3.1.9) from Cupriavidus necator

60% id,
100% cov

AtoB / b2224: acetyl-CoA acetyltransferase (EC 2.3.1.16; EC 2.3.1.9) from Escherichia coli
atoB / P76461: acetyl-CoA acetyltransferase (EC 2.3.1.16) from Escherichia coli

50% id,
99% cov

thlA1 / A5N3I5: acetyl-CoA acetyltransferase (EC 2.3.1.16) from Clostridium kluyveri

50% id,
99% cov

More...

Dshi_0836: acetyl-CoA acetyltransferase (RefSeq)
is similar to:
PaperBLAST

HP15_1513: Acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Marinobacter adhaerens

39% id,
100% cov

FADA_ECOLI / P21151: 3-ketoacyl-CoA thiolase FadA; Acetyl-CoA acyltransferase; Beta-ketothiolase; Fatty acid oxidation complex subunit beta; EC 2.3.1.16 from Escherichia coli
OldA / b3845: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) from Escherichia coli
fadA / P21151: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) from Escherichia coli

39% id,
100% cov

pcaF / Q51956: subunit of β-ketoadipyl CoA thiolase (EC 2.3.1.174; EC 2.3.1.16) from Pseudomonas putida

38% id,
100% cov

More...

Dshi_0835: 3-hydroxyacyl-CoA dehydrogenase NAD-binding (RefSeq)
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

31% id,
94% cov

Dshi_3826: 3-hydroxyacyl-CoA dehydrogenase NAD-binding (RefSeq)
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

25% id,
59% cov

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

30% id,
29% cov

Dshi_0214: 3-hydroxybutyryl-CoA dehydrogenase (RefSeq)
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

29% id,
37% cov

Dshi_3370: Enoyl-CoA hydratase/isomerase (RefSeq)
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

35% id,
30% cov

Dshi_1048: Enoyl-CoA hydratase/isomerase (RefSeq)
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

30% id,
28% cov

Dshi_2180: Beta-ketoacyl synthase (RefSeq)
is similar to:
PaperBLAST

Msed_0656 / A4YEH9: acetyl-CoA C-acetyltransferase (EC 2.3.1.16) from Metallosphaera sedula

31% id,
26% cov

Dshi_0067: Enoyl-CoA hydratase/isomerase (RefSeq)
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

28% id,
29% cov

Dshi_3723: Enoyl-CoA hydratase/isomerase (RefSeq)
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

24% id,
29% cov

Dshi_0781: Sterol-binding domain protein (RefSeq)
is similar to:
PaperBLAST

SCP2_RAT / P11915: Sterol carrier protein 2; SCP-2; Acetyl-CoA C-myristoyltransferase; Non-specific lipid-transfer protein; NSL-TP; Propanoyl-CoA C-acyltransferase; SCP-2/3-oxoacyl-CoA thiolase; SCP-2/thiolase; SCP-chi; Sterol carrier protein X; SCP-X; Straight-chain acyl-CoA oxidase; SCPX; EC 2.3.1.155; EC 2.3.1.176; EC 2.3.1.16 from Rattus norvegicus

35% id,
18% cov

SCP2_HUMAN / P22307: Sterol carrier protein 2; SCP-2; Acetyl-CoA C-myristoyltransferase; Non-specific lipid-transfer protein; NSL-TP; Propanoyl-CoA C-acyltransferase; SCP-2/3-oxoacyl-CoA thiolase; SCP-2/thiolase; SCP-chi; SCPX; Sterol carrier protein X; SCP-X; Straight-chain acyl-CoA oxidase; SCOX; EC 2.3.1.155; EC 2.3.1.176; EC 2.3.1.16 from Homo sapiens
SCP2 / P22307: Non-specific lipid-transfer protein (EC 2.3.1.16) from Homo sapiens

35% id,
18% cov

SCP2_CHICK / Q07598: Sterol carrier protein 2; SCP-2; Acetyl-CoA C-myristoyltransferase; Non-specific lipid-transfer protein; NSL-TP; Propanoyl-CoA C-acyltransferase; SCP-2/3-oxoacyl-CoA thiolase; SCP-2/thiolase; SCP-chi; SCPX; Sterol carrier protein X; SCP-X; EC 2.3.1.155; EC 2.3.1.176; EC 2.3.1.16 from Gallus gallus

35% id,
18% cov

More...

Dshi_1616: Beta-ketoacyl synthase (RefSeq)
is similar to:
PaperBLAST

ECHB_MOUSE / Q99JY0: Trifunctional enzyme subunit beta, mitochondrial; TP-beta; EC 2.3.1.155; EC 2.3.1.16 from Mus musculus

40% id,
12% cov

ECHB_RAT / Q60587: Trifunctional enzyme subunit beta, mitochondrial; TP-beta; EC 2.3.1.155; EC 2.3.1.16 from Rattus norvegicus

40% id,
12% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 13 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

844057-846360 (frame -3) on 57145
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus
Also see hits to annotated proteins above

31% id,
98% cov

3542540-3543640 (frame +2) on 57145
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus
Also see hits to annotated proteins above

34% id,
32% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory