Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 22 curated entries in PaperBLAST's database that match '2.3.3.14' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_0596: 2-isopropylmalate synthase (RefSeq)
is similar to:
PaperBLAST

D0VY45: homocitrate synthase (EC 2.3.3.14) from Lotus japonicus

48% id,
95% cov

P58637: homocitrate synthase (EC 2.3.3.14) from Nostoc sp.

38% id,
98% cov

AKSA_METJA / Q57926: Homocitrate synthase AksA; (R)-homo(2)citrate synthase; (R)-homo(3)citrate synthase; EC 2.3.3.14; EC 2.3.3.- from Methanocaldococcus jannaschii

40% id,
92% cov

More...

Dshi_1696: 2-isopropylmalate synthase/homocitrate synthase family protein (RefSeq)
is similar to:
PaperBLAST

P58637: homocitrate synthase (EC 2.3.3.14) from Nostoc sp.

32% id,
93% cov

HOSA_THET2 / O87198: Homocitrate synthase; HCS; EC 2.3.3.14 from Thermus thermophilus
hcs / O87198: homocitrate synthase (EC 2.3.3.14) from Thermus thermophilus

30% id,
94% cov

AKSA_METJA / Q57926: Homocitrate synthase AksA; (R)-homo(2)citrate synthase; (R)-homo(3)citrate synthase; EC 2.3.3.14; EC 2.3.3.- from Methanocaldococcus jannaschii

30% id,
92% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

587096-588721 (frame -2) on 57145
is similar to:
PaperBLAST

D0VY45: homocitrate synthase (EC 2.3.3.14) from Lotus japonicus
Also see hits to annotated proteins above

47% id,
99% cov

A0A0S6UXF5: homocitrate synthase (EC 2.3.3.14) from Bradyrhizobium sp.
Also see hits to annotated proteins above

34% id,
98% cov

C7C437: homocitrate synthase (EC 2.3.3.14) from Aspergillus fumigatus
Also see hits to annotated proteins above

29% id,
85% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory