Curated BLAST for Genomes


Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 33 curated entries in PaperBLAST's database that match ''.

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_1806: citrate synthase I (RefSeq)
is similar to:

PRPC_ABDS2 / O34002: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC; EC from Antarctic bacterium

34% id,
98% cov

Pf6N2E2_6062: 2-methylcitrate synthase (EC from Pseudomonas fluorescens

35% id,
93% cov

Q9I5E3: 2-methylcitrate synthase (EC from Pseudomonas aeruginosa

32% id,
97% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory