Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 23 curated entries in PaperBLAST's database that match '2.6.1.9' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_2946: histidinol-phosphate aminotransferase (RefSeq)
is similar to:		 PaperBLAST

PGA1_c25240: histidinol-phosphate aminotransferase [EC:2.6.1.9] from Phaeobacter inhibens

 78% id,
99% cov

AZOBR_RS20485: histidinol-phosphate aminotransferase [EC:2.6.1.9] from Azospirillum brasilense

 53% id,
98% cov

HIS8_ZYMMO / P34037: Histidinol-phosphate aminotransferase; Imidazole acetol phosphate aminotransferase; IAP aminotransferase; Imidazole acetol-phosphate transaminase; EC 2.6.1.9 from Zymomonas mobilis

 45% id,
98% cov

More...

Dshi_2088: aminotransferase class I and II (RefSeq)
is similar to:		 PaperBLAST

AZOBR_RS20485: histidinol-phosphate aminotransferase [EC:2.6.1.9] from Azospirillum brasilense

 31% id,
98% cov

hisC / P17731: histidinol-phosphate aminotransferase; tyrosine/phenylalanine aminotransferase (promiscuous) (EC 2.6.1.1; EC 2.6.1.9) from Bacillus subtilis

 31% id,
95% cov

PGA1_c25240: histidinol-phosphate aminotransferase [EC:2.6.1.9] from Phaeobacter inhibens

 32% id,
92% cov

More...

Dshi_0762: aminotransferase class I and II (RefSeq)
is similar to:		 PaperBLAST

AZOBR_RS20485: histidinol-phosphate aminotransferase [EC:2.6.1.9] from Azospirillum brasilense

 25% id,
98% cov

Dshi_0166: aminotransferase class I and II (RefSeq)
is similar to:		 PaperBLAST

Psest_3297: histidinol-phosphate aminotransferase (EC 2.6.1.9) from Pseudomonas stutzeri

 21% id,
80% cov

DVU1029: histidinol-phosphate aminotransferase (EC 2.6.1.9) from Desulfovibrio vulgaris

 32% id,
52% cov

HP15_2427: histidinol-phosphate aminotransferase (EC 2.6.1.9) from Marinobacter adhaerens

 26% id,
58% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory