Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 31 curated entries in PaperBLAST's database that match '2.7.1.15' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_1976: PfkB domain protein (RefSeq)
is similar to:
PaperBLAST

H281DRAFT_01116: deoxyribose kinase (EC 2.7.1.15) from Paraburkholderia bryophila

60% id,
94% cov

BPHYT_RS25805: deoxyribose kinase (EC 2.7.1.15) from Burkholderia phytofirmans

59% id,
91% cov

BWI76_RS00290: Ribokinase (EC 2.7.1.15) from Klebsiella michiganensis

44% id,
97% cov

More...

Dshi_1268: PfkB domain protein (RefSeq)
is similar to:
PaperBLAST

HSERO_RS11500: Ribokinase (EC 2.7.1.15) from Herbaspirillum seropedicae

29% id,
99% cov

AO356_00950: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

28% id,
98% cov

AO353_20835: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

27% id,
98% cov

More...

Dshi_2797: PfkB domain protein (RefSeq)
is similar to:
PaperBLAST

SMc01103: Ribokinase (EC 2.7.1.15) from Sinorhizobium meliloti

29% id,
96% cov

BWI76_RS00290: Ribokinase (EC 2.7.1.15) from Klebsiella michiganensis

27% id,
91% cov

RBSK_ECOLI / P0A9J6: Ribokinase; RK; EC 2.7.1.15 from Escherichia coli
RbsK / b3752: ribokinase (EC 2.7.1.15) from Escherichia coli
rbsK / P0A9J6: ribokinase (EC 2.7.1.15) from Escherichia coli

28% id,
84% cov

More...

Dshi_1547: PfkB domain protein (RefSeq)
is similar to:
PaperBLAST

AO353_20835: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

27% id,
94% cov

Pf1N1B4_6031: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

27% id,
94% cov

AO356_00950: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

26% id,
94% cov

Dshi_1621: PfkB domain protein (RefSeq)
is similar to:
PaperBLAST

AO353_20835: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

31% id,
81% cov

AO356_00950: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

30% id,
81% cov

Pf1N1B4_6031: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

29% id,
81% cov

More...

Dshi_2738: ribose 5-phosphate isomerase (RefSeq)
is similar to:
PaperBLAST

RBSKI_FRUSL / P83534: Bifunctional ribokinase/ribose-5-phosphate isomerase A; EC 2.7.1.15; EC 5.3.1.6 from Fructilactobacillus sanfranciscensis

38% id,
40% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory