Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 9 curated entries in PaperBLAST's database that match '2.7.1.16' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_0537: carbohydrate kinase FGGY (RefSeq)
is similar to:
PaperBLAST

Q9KBQ3: ribulokinase (EC 2.7.1.16) from Alkalihalobacillus halodurans

31% id,
94% cov

ARAB_BACSU / P94524: Ribulokinase; EC 2.7.1.16 from Bacillus subtilis

29% id,
95% cov

ARAB_ECOLI / P08204: Ribulokinase; EC 2.7.1.16 from Escherichia coli
AraB / b0063: ribulokinase (EC 2.7.1.16) from Escherichia coli
araB: ribulokinase; EC 2.7.1.16 from Escherichia coli
araB / P08204: ribulokinase (EC 2.7.1.16) from Escherichia coli

28% id,
95% cov

Dshi_0555: FGGY-family pentulose kinase (RefSeq)
is similar to:
PaperBLAST

CA265_RS08625: Ribulokinase (EC 2.7.1.16) from Pedobacter sp.

29% id,
91% cov

Dshi_1235: xylulokinase (RefSeq)
is similar to:
PaperBLAST

ARAB_ECOLI / P08204: Ribulokinase; EC 2.7.1.16 from Escherichia coli
AraB / b0063: ribulokinase (EC 2.7.1.16) from Escherichia coli
araB: ribulokinase; EC 2.7.1.16 from Escherichia coli
araB / P08204: ribulokinase (EC 2.7.1.16) from Escherichia coli

25% id,
80% cov

CA265_RS08625: Ribulokinase (EC 2.7.1.16) from Pedobacter sp.

28% id,
33% cov

Echvi_0515: Ribulokinase (EC 2.7.1.16) from Echinicola vietnamensis

32% id,
27% cov

Dshi_1997: xylulokinase (RefSeq)
is similar to:
PaperBLAST

Echvi_0515: Ribulokinase (EC 2.7.1.16) from Echinicola vietnamensis

26% id,
26% cov

ARAB_ECOLI / P08204: Ribulokinase; EC 2.7.1.16 from Escherichia coli
AraB / b0063: ribulokinase (EC 2.7.1.16) from Escherichia coli
araB: ribulokinase; EC 2.7.1.16 from Escherichia coli
araB / P08204: ribulokinase (EC 2.7.1.16) from Escherichia coli

23% id,
26% cov

CA265_RS08625: Ribulokinase (EC 2.7.1.16) from Pedobacter sp.

25% id,
19% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory