Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 12 curated entries in PaperBLAST's database that match '2.7.1.39'.

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_1609: Shikimate kinase (RefSeq)
is similar to:
PaperBLAST

DvMF_0971: Homoserine kinase (EC:2.7.1.39) from Desulfovibrio vulgaris

33% id,
86% cov

Dshi_2059: hypothetical protein (RefSeq)
is similar to:
PaperBLAST

DvMF_0971: Homoserine kinase (EC:2.7.1.39) from Desulfovibrio vulgaris

37% id,
32% cov

Dshi_1023: cytidylate kinase (RefSeq)
is similar to:
PaperBLAST

DvMF_0971: Homoserine kinase (EC:2.7.1.39) from Desulfovibrio vulgaris

33% id,
34% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory