Curated BLAST for Genomes


Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 10 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_2429: carbohydrate kinase FGGY (RefSeq)
is similar to:

Dshi_2429: Rhamnulokinase RhaK in alpha-proteobacteria (EC from Dinoroseobacter shibae

100% id,
100% cov

SMc03003: Rhamnulokinase RhaK in alpha-proteobacteria (EC from Sinorhizobium meliloti

52% id,
98% cov

rhaK / Q7BSH0: rhamnulokinase (EC from Rhizobium leguminosarum

50% id,
98% cov


Dshi_1235: xylulokinase (RefSeq)
is similar to:

RHAB_ECOLI / P32171: L-Rhamnulokinase; RhaB; RhuK; ATP:L-rhamnulose phosphotransferase; L-rhamnulose 1-kinase; Rhamnulose kinase; EC from Escherichia coli
RhaB / b3904: rhamnulokinase (EC from Escherichia coli
rhaB / P32171: rhamnulokinase (EC from Escherichia coli

26% id,
29% cov

RHAB_ECOUT / Q1R415: Rhamnulokinase; Rhamnulose kinase; EC from Escherichia coli

25% id,
29% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory