Curated BLAST for Genomes


Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 21 curated entries in PaperBLAST's database that match ''.

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_2001: ROK family protein (RefSeq)
is similar to:

rokA / Q5GBH5: glucokinase / N-acetylglucosamine kinase / mannokinase (EC; EC; EC from Bacteroides fragilis

30% id,
95% cov

AGAK_SHESA / A0KYQ6: N-acetylgalactosamine kinase AgaK; GalNAc kinase; N-acetylglucosamine kinase; GlcNAc kinase; EC 2.7.1.-; EC from Shewanella sp.

27% id,
93% cov

CA265_RS11300: N-acetylglucosamine kinase (EC from Pedobacter sp.

25% id,
81% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory